Factsheet for Zm00001d014201_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94272	Sorghum	nucleus	83.91	80.66
Zm00001d033005_P001	Maize	nucleus	79.31	76.03
Os10t0404900-01	Rice	nucleus	66.09	64.79
TraesCS4B01G287600.1	Wheat	nucleus	55.17	58.01
TraesCS4D01G286400.2	Wheat	nucleus	55.17	56.64
Zm00001d027852_P001	Maize	nucleus	55.17	55.81
TraesCS4A01G016600.1	Wheat	nucleus, plastid	54.02	55.62
Zm00001d048312_P001	Maize	nucleus	54.31	54.94
GSMUA_Achr1P21620_001	Banana	nucleus	43.1	53.38
GSMUA_Achr6P10660_001	Banana	nucleus	43.1	53.0
GSMUA_Achr2P07420_001	Banana	nucleus	43.39	51.71
GSMUA_Achr1P12270_001	Banana	nucleus	42.24	50.17
GSMUA_Achr7P11600_001	Banana	nucleus	39.66	50.0
HORVU4Hr1G075180.3	Barley	nucleus, plastid	55.75	49.24
KRG99070	Soybean	nucleus	24.14	48.84
VIT_01s0026g01950.t01	Wine grape	nucleus	39.94	48.77
PGSC0003DMT400002259	Potato	nucleus	32.76	48.51
GSMUA_Achr10P...	Banana	nucleus	39.66	48.25
GSMUA_Achr3P21430_001	Banana	nucleus	36.49	47.74
KRG99129	Soybean	nucleus	37.64	46.95
KRH45876	Soybean	nucleus	37.07	46.07
KRH74821	Soybean	nucleus	38.51	46.05
KRH69308	Soybean	nucleus	38.79	45.76
PGSC0003DMT400065805	Potato	nucleus	39.94	45.42
Solyc01g010600.2.1	Tomato	nucleus	31.61	45.27
Solyc05g007180.2.1	Tomato	nucleus	39.66	45.25
GSMUA_Achr7P20950_001	Banana	nucleus	30.46	44.92
GSMUA_Achr6P36450_001	Banana	nucleus	29.31	43.97
Bra003980.1-P	Field mustard	nucleus	31.61	43.65
CDY48391	Canola	nucleus	31.61	43.65
CDY38759	Canola	nucleus	35.34	43.31
CDY44091	Canola	nucleus	33.05	43.23
Bra007881.1-P	Field mustard	nucleus	35.06	42.81
AT1G69780.1	Thale cress	nucleus	35.92	42.52
GSMUA_Achr4P00550_001	Banana	nucleus	34.2	42.5
VIT_14s0108g00390.t01	Wine grape	nucleus	34.48	42.4
CDY11659	Canola	nucleus	35.06	42.36
Bra016266.1-P	Field mustard	nucleus	35.06	42.36
CDY23547	Canola	nucleus	33.62	41.79
CDY70870	Canola	nucleus	35.06	40.53
HORVU4Hr1G075170.1	Barley	nucleus	29.31	39.84
Zm00001d020804_P001	Maize	nucleus	25.57	34.1
Zm00001d017422_P001	Maize	nucleus	20.98	31.06
Zm00001d005951_P001	Maize	nucleus	26.15	29.84
Zm00001d050310_P001	Maize	nucleus	21.55	27.57
Zm00001d032316_P001	Maize	nucleus	21.26	27.41
Zm00001d005692_P001	Maize	nucleus	20.69	25.44
Zm00001d030532_P002	Maize	nucleus	22.13	25.25
Zm00001d017920_P001	Maize	nucleus	23.85	25.15
Zm00001d021268_P001	Maize	nucleus	17.24	25.1
Zm00001d027991_P001	Maize	nucleus	22.99	24.54
Zm00001d051749_P001	Maize	nucleus	23.85	24.48
Zm00001d006195_P001	Maize	nucleus	16.95	24.18
Zm00001d025964_P001	Maize	nucleus	18.39	23.88
Zm00001d002799_P001	Maize	nucleus	17.82	23.75
Zm00001d048227_P001	Maize	extracellular, nucleus, plastid	19.83	18.65

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	UniProt:A0A060D8B1	ProteinID:AQK65545.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	EMBL:KJ728412	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF225	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0001B37567	EnsemblPlantsGene:Zm00001d014201	EnsemblPlants:Zm00001d014201_P001	EnsemblPlants:Zm00001d014201_T001	SEG:seg

Description

Homeobox-transcription factor 98Homeobox-leucine zipper protein ATHB-13

Coordinates

chr5:-:36222862..36225042

Molecular Weight (calculated)

37532.9 Da

IEP (calculated)

6.459

GRAVY (calculated)

-0.689

Length

348 amino acids

Sequence
(BLAST)

001: MKPMATNGMA PSFFAANFLL QMQQEQQAHH QHQHHEGHDH LLAPPPPALV SPFLHDFGGA MTAPPPPMLA TGIKRMYPDG MCDDGSGHLH AEPKQHQQDC
101: GGGASDDEEG SAAAACGERK RRLSVEQVRT LERSFEVANK LEPERKAQLA RALGLQPRQV AIWFQNRRAR WKTKQLEKDY DALRRQLDAA RAENDALLSH
201: NKKLQTEIMA LKGGGGGRQE AASELINLNV KETEASCSNR SSDENSSEIN LDISRPPRAA DESPAAMDSY RGIPFYACAR ADDVDQLQLL HSGGHPSPAP
301: KMEPGHGAAA TAGGGGGGGG TFGSLLCGAA ADEQPPFWPW ADGHHAFQ

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.