Factsheet for GSMUA_Achr6P10660_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	79.15	78.32
GSMUA_Achr1P21620_001	Banana	nucleus	70.67	71.17
GSMUA_Achr1P12270_001	Banana	nucleus	72.08	69.62
GSMUA_Achr2P07420_001	Banana	nucleus	71.73	69.52
GSMUA_Achr7P11600_001	Banana	nucleus	65.72	67.39
VIT_01s0026g01950.t01	Wine grape	nucleus	58.3	57.89
GSMUA_Achr3P21430_001	Banana	nucleus	52.3	55.64
GSMUA_Achr7P20950_001	Banana	nucleus	45.58	54.66
GSMUA_Achr4P00550_001	Banana	nucleus	54.06	54.64
KRH74821	Soybean	nucleus	55.83	54.3
KRH69308	Soybean	nucleus	56.54	54.24
KRG99129	Soybean	nucleus	53.0	53.76
KRH45876	Soybean	nucleus	53.0	53.57
GSMUA_Achr6P36450_001	Banana	nucleus	43.46	53.02
PGSC0003DMT400002259	Potato	nucleus	43.46	52.34
Solyc01g010600.2.1	Tomato	nucleus	44.17	51.44
TraesCS4B01G287600.1	Wheat	nucleus	59.72	51.06
CDY44091	Canola	nucleus	47.7	50.75
KRG99070	Soybean	nucleus	30.74	50.58
Zm00001d027852_P001	Maize	nucleus	61.13	50.29
VIT_14s0108g00390.t01	Wine grape	nucleus	50.18	50.18
EER92780	Sorghum	nucleus	62.9	50.14
TraesCS4D01G286400.2	Wheat	nucleus	59.72	49.85
Zm00001d048312_P001	Maize	nucleus	60.42	49.71
Bra007881.1-P	Field mustard	nucleus	49.82	49.47
TraesCS4A01G016600.1	Wheat	nucleus, plastid	59.01	49.41
PGSC0003DMT400065805	Potato	nucleus	53.36	49.35
CDY38759	Canola	nucleus	49.47	49.3
Solyc05g007180.2.1	Tomato	nucleus	53.0	49.18
Bra003980.1-P	Field mustard	nucleus	43.46	48.81
CDY48391	Canola	nucleus	43.46	48.81
Bra016266.1-P	Field mustard	nucleus	49.47	48.61
CDY11659	Canola	nucleus	49.47	48.61
AT1G69780.1	Thale cress	nucleus	50.18	48.3
CDY70870	Canola	nucleus	49.82	46.84
CDY23547	Canola	nucleus	46.29	46.79
Zm00001d014201_P001	Maize	nucleus	53.0	43.1
HORVU4Hr1G075180.3	Barley	nucleus, plastid	59.36	42.64
EER94272	Sorghum	nucleus	54.42	42.54
Os10t0404900-01	Rice	nucleus	53.36	42.54
Zm00001d033005_P001	Maize	nucleus	52.65	41.05
HORVU4Hr1G075170.1	Barley	nucleus	32.86	36.33
GSMUA_Achr10P...	Banana	nucleus	22.61	33.68
GSMUA_Achr7P12740_001	Banana	nucleus	25.09	31.14
GSMUA_Achr5P05300_001	Banana	nucleus	22.61	31.07
GSMUA_Achr6P10310_001	Banana	nucleus	22.61	30.92
GSMUA_Achr3P06620_001	Banana	nucleus	27.92	28.83
GSMUA_Achr10P...	Banana	nucleus	24.73	28.34
GSMUA_Achr7P11760_001	Banana	nucleus	25.09	28.17
GSMUA_Achr10P...	Banana	nucleus	25.8	27.76
GSMUA_Achr9P14570_001	Banana	nucleus	24.73	26.62
GSMUA_Achr7P09730_001	Banana	nucleus	27.92	26.33
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	25.44	25.17
GSMUA_Achr9P18360_001	Banana	nucleus	24.38	24.38
GSMUA_Achr8P25940_001	Banana	nucleus	24.03	23.69
GSMUA_Achr3P06190_001	Banana	nucleus	23.67	23.67
GSMUA_Achr1P16280_001	Banana	nucleus	18.02	23.18
GSMUA_Achr9P14960_001	Banana	nucleus	22.97	23.13
GSMUA_Achr10P...	Banana	nucleus	27.21	22.25
GSMUA_Achr1P18670_001	Banana	nucleus	18.37	17.93

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G10660_001	EnsemblPlants:GSMUA_Achr6P10660_001	EnsemblPlants:GSMUA_Achr6T10660_001	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0T5W5	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF176
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000295981F	:	:	:

Description

Homeobox-leucine zipper protein HOX21 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10660_001]

Coordinates

chr6:-:7091523..7093271

Molecular Weight (calculated)

31891.9 Da

IEP (calculated)

5.100

GRAVY (calculated)

-0.627

Length

283 amino acids

Sequence
(BLAST)

001: MACNGMASSS SFPSNFMVPM QINCGEENQL GIPVGPLLLA NLQDLRGVPP MMGKISMSFP GIETGDEMTA DDDLSDDGLP AGEKKKRLNI EQVRTLERNF
101: ELGNRLEPER KMQLARVLGL RPRQVAIWFQ NRRARWKTKQ LEKEYDVLKR QLEATKTENE ALQVQNKKLQ AEILALRGGE ASELINLNKE TEGSCSNRSE
201: NSSDINLDIS RTSVTESPLP PHQTLPYFQS VRPADTDLLL HSSCKPEFQC PKVENDEGSF INLLCSMGDQ PAFWPWPDHH NFH

Best Arabidopsis Sequence Match ( AT1G26960.1 )
(BLAST)

001: MSCNNNGLAF FPENFSLQNH HQEEEDHPQL LQDFHGFLGK RSPMNNVQGF CNLDMNGDEE YSDDGSKMGE KKRRLNMEQL KALEKDFELG NKLESDRKLE
101: LARALGLQPR QIAIWFQNRR ARSKTKQLEK DYDMLKRQFE SLRDENEVLQ TQNQKLQAQV MALKSREPIE SINLNKETEG SCSDRSENIS GDIRPPEIDS
201: QFALGHPPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID DQSGFWPWLD QQQYN

Arabidopsis Description

ATHB-23Homeobox-leucine zipper protein ATHB-23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.