Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P12740_001 | Banana | nucleus | 47.53 | 54.82 |
| GSMUA_Achr3P06620_001 | Banana | nucleus | 57.03 | 54.74 |
| OQU81036 | Sorghum | nucleus | 38.02 | 54.35 |
| GSMUA_Achr10P... | Banana | nucleus | 47.53 | 50.61 |
| GSMUA_Achr6P10310_001 | Banana | nucleus | 38.02 | 48.31 |
| Zm00001d020804_P001 | Maize | nucleus | 46.77 | 47.13 |
| Os09t0470500-01 | Rice | nucleus | 48.29 | 45.85 |
| EER96901 | Sorghum | nucleus | 47.15 | 45.42 |
| HORVU5Hr1G070260.1 | Barley | nucleus | 46.01 | 45.32 |
| GSMUA_Achr10P... | Banana | nucleus | 32.7 | 45.26 |
| Os08t0481400-01 | Rice | nucleus | 46.01 | 44.98 |
| TraesCS5B01G246700.1 | Wheat | nucleus | 46.01 | 44.98 |
| TraesCS5D01G256200.1 | Wheat | nucleus | 46.01 | 44.81 |
| TraesCS5A01G249000.1 | Wheat | nucleus | 46.01 | 44.81 |
| GSMUA_Achr7P11760_001 | Banana | nucleus | 42.21 | 44.05 |
| GSMUA_Achr9P14960_001 | Banana | nucleus | 46.39 | 43.42 |
| GSMUA_Achr2P14750_001 | Banana | extracellular, nucleus | 43.73 | 40.21 |
| Zm00001d005951_P001 | Maize | nucleus | 45.63 | 39.34 |
| TraesCS4A01G405800.1 | Wheat | nucleus | 35.36 | 32.63 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 28.52 | 32.33 |
| Os03t0188900-01 | Rice | nucleus | 37.64 | 31.83 |
| GSMUA_Achr5P05300_001 | Banana | nucleus | 24.71 | 31.55 |
| Zm00001d030532_P002 | Maize | nucleus | 34.98 | 30.16 |
| TraesCS4B01G305300.1 | Wheat | nucleus | 36.12 | 30.06 |
| TraesCS4D01G303500.1 | Wheat | nucleus | 35.74 | 29.75 |
| Os10t0377300-01 | Rice | nucleus | 33.84 | 29.18 |
| Zm00001d027991_P001 | Maize | nucleus | 36.12 | 29.14 |
| EER92730 | Sorghum | nucleus | 35.36 | 28.7 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 23.95 | 28.64 |
| GSMUA_Achr9P14570_001 | Banana | nucleus | 28.14 | 28.14 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 31.18 | 27.99 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 25.1 | 27.97 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 28.9 | 27.54 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 29.28 | 27.4 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 28.9 | 27.14 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 30.04 | 27.05 |
| GSMUA_Achr8P25940_001 | Banana | nucleus | 29.28 | 26.83 |
| GSMUA_Achr7P09730_001 | Banana | nucleus | 30.42 | 26.67 |
| GSMUA_Achr3P06190_001 | Banana | nucleus | 28.14 | 26.15 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 26.24 | 25.94 |
| GSMUA_Achr10P... | Banana | nucleus | 28.14 | 25.87 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 27.76 | 25.8 |
| GSMUA_Achr9P18360_001 | Banana | nucleus | 27.0 | 25.09 |
| HORVU4Hr1G078410.5 | Barley | nucleus, plastid | 30.04 | 24.01 |
| GSMUA_Achr10P... | Banana | nucleus | 30.8 | 23.41 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 24.33 | 22.07 |
| Zm00001d048227_P001 | Maize | extracellular, nucleus, plastid | 29.66 | 21.08 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr10G30330_001 | EnsemblPlants:GSMUA_Achr10P30330_001 | EnsemblPlants:GSMUA_Achr10T30330_001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | UniProt:M0RMQ7 | PFAM:PF00046 |
| PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF524 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002948228 | SEG:seg | : | : |
Description
Transcription factor (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G30330_001]
Coordinates
chr10:+:32565464..32566692
Molecular Weight (calculated)
29543.6 Da
IEP (calculated)
4.893
GRAVY (calculated)
-0.763
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSWLAGEDQ EDVYGGDFQP IMEGLDEDDG GGDEELCAAT TAGGGAKKRR LSTEQVRALE KNFEVENKLE PERKVRLAKE LGLQPRQVAV WFQNRRARWK
101: TKQLEHDYAA LRTSYDALRL DFDSLHRDKE SLLSQIDDLK AKLAETEGLS LSFSSSAKEG PAVPETAAKA PESEDPPAAI CKDGSSSSDS SAVHHEVLKM
201: EEEELLCEPC CSFFSDEQAA TLNCPKKREN RWEKKELNIK KRSNFIRKLL GKMLINLDNF KFG
101: TKQLEHDYAA LRTSYDALRL DFDSLHRDKE SLLSQIDDLK AKLAETEGLS LSFSSSAKEG PAVPETAAKA PESEDPPAAI CKDGSSSSDS SAVHHEVLKM
201: EEEELLCEPC CSFFSDEQAA TLNCPKKREN RWEKKELNIK KRSNFIRKLL GKMLINLDNF KFG
001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
Arabidopsis Description
ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.