Factsheet for HORVU5Hr1G070260.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G246700.1	Wheat	nucleus	96.63	95.91
TraesCS5D01G256200.1	Wheat	nucleus	95.88	94.81
TraesCS5A01G249000.1	Wheat	nucleus	95.88	94.81
Zm00001d020804_P001	Maize	nucleus	76.78	78.54
Os09t0470500-01	Rice	nucleus	80.15	77.26
EER96901	Sorghum	nucleus	78.28	76.56
Zm00001d005951_P001	Maize	nucleus	75.66	66.23
GSMUA_Achr7P12740_001	Banana	nucleus	43.82	51.32
GSMUA_Achr3P06620_001	Banana	nucleus	52.06	50.73
GSMUA_Achr10P...	Banana	nucleus	46.44	50.2
GSMUA_Achr6P10310_001	Banana	nucleus	38.2	49.28
GSMUA_Achr10P...	Banana	nucleus	34.46	48.42
GSMUA_Achr7P11760_001	Banana	nucleus	44.94	47.62
GSMUA_Achr10P...	Banana	nucleus	45.32	46.01
GSMUA_Achr9P14960_001	Banana	nucleus	46.07	43.77
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	45.69	42.66
HORVU4Hr1G078410.5	Barley	nucleus, plastid	34.46	27.96
HORVU5Hr1G081090.1	Barley	nucleus	25.84	27.6
HORVU4Hr1G075170.1	Barley	nucleus	25.84	26.95
HORVU5Hr1G059410.2	Barley	nucleus	32.21	26.22
HORVU2Hr1G092710.2	Barley	nucleus	25.84	25.94
HORVU6Hr1G072810.7	Barley	nucleus	32.58	25.0
HORVU4Hr1G075180.3	Barley	nucleus, plastid	34.83	23.6
HORVU6Hr1G061390.1	Barley	nucleus	26.97	22.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EMBL:AK354063	EMBL:AK355887	EMBL:AK364089	ncoils:Coil
UniProt:F2CR11	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU5Hr1G070260
EnsemblPlants:HORVU5Hr1G070260.1	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF317	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00020044F8	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CR11]

Coordinates

chrchr5H:+:527679961..527683202

Molecular Weight (calculated)

28728.3 Da

IEP (calculated)

4.363

GRAVY (calculated)

-0.753

Length

267 amino acids

Sequence
(BLAST)

001: MKRPGGGNPS PLHQMASPSD MDYGVVGMEA DGDAEEEMMA CGGGGGGCGG GEKKRRLSAE QVRALERSFE VENKLEPERK ARLARDLGLQ PRQVAVWFQN
101: RRARWKTKQL ERDYNALRHS YDALRLDHDA LRRDKEALLA EIKDLKGKLG DEEAAASFTS VKEEPAASDG PPPAGMGSSD SDSSGVLNDT DATGATPAEE
201: APAPEMGELL GGPGAAVAGH GQMFLQGNFL KVEEDETGFL DDEEPCGGFF ADEPPLAWWT EPADPWK

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.