Factsheet for Os09t0470500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18049796

gfp PMID: 18049796 doi

M Dai, Y Hu, Q Ma, Y Zhao, DX Zhou

National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020804_P001	Maize	nucleus	76.53	81.23
TraesCS5B01G246700.1	Wheat	nucleus	78.7	81.04
TraesCS5D01G256200.1	Wheat	nucleus	78.7	80.74
TraesCS5A01G249000.1	Wheat	nucleus	78.34	80.37
EER96901	Sorghum	nucleus	79.06	80.22
HORVU5Hr1G070260.1	Barley	nucleus	77.26	80.15
Zm00001d005951_P001	Maize	nucleus	76.17	69.18
Os08t0481400-01	Rice	nucleus	66.43	68.4
GSMUA_Achr3P06620_001	Banana	nucleus	53.07	53.65
GSMUA_Achr7P12740_001	Banana	nucleus	43.32	52.63
GSMUA_Achr10P...	Banana	nucleus	46.57	52.23
GSMUA_Achr6P10310_001	Banana	nucleus	37.55	50.24
GSMUA_Achr10P...	Banana	nucleus	33.21	48.42
GSMUA_Achr10P...	Banana	nucleus	45.85	48.29
GSMUA_Achr7P11760_001	Banana	nucleus	43.68	48.02
GSMUA_Achr9P14960_001	Banana	nucleus	47.65	46.98
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	45.49	44.06
Os03t0188900-01	Rice	nucleus	42.96	38.26
Os10t0377300-01	Rice	nucleus	40.43	36.72
Os09t0379600-00	Rice	nucleus	22.74	30.0
Os02t0649300-01	Rice	nucleus	27.08	28.74
Os02t0729700-01	Rice	nucleus	33.57	27.11
Os04t0541700-02	Rice	nucleus	26.35	26.45
Os09t0528200-01	Rice	nucleus	23.47	26.1
Os10t0404900-01	Rice	nucleus	32.85	25.63
Os08t0416000-01	Rice	nucleus	31.77	25.21
Os03t0170600-01	Rice	cytosol, nucleus	3.61	14.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:4347333	EMBL:AK099710	ProteinID:BAD22271.1	ProteinID:BAF25350.1
ProteinID:BAT08549.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	EnsemblPlantsGene:Os09g0470500	EnsemblPlants:Os09t0470500-01	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF317	UniProt:Q6K498	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI000009F6FF	RefSeq:XP_015612509.1	SEG:seg	:	:

Description

HOMEOBOX GENE 4Homeodomain leucine zipper protein. (Os09t0470500-01)

Coordinates

chr9:+:17903166..17904869

Molecular Weight (calculated)

29393.7 Da

IEP (calculated)

4.359

GRAVY (calculated)

-0.578

Length

277 amino acids

Sequence
(BLAST)

001: MKRPGGAGGG GGSPSLVTMA NSSDDGYGGV GMEAEGDVEE EMMACGGGGE KKRRLSVEQV RALERSFEVE NKLEPERKAR LARDLGLQPR QVAVWFQNRR
101: ARWKTKQLER DYAALRHSYD SLRLDHDALR RDKDALLAEI KELKAKLGDE EAAASFTSVK EEPAASDGPP AAGFGSSDSD SSAVLNDVDA AGAAPAATDA
201: LAPEACTFLG APPAAGAGAG AAAAASHEEV FFHGNFLKVE EDETGFLDDD EPCGGFFADD QPPPLSSWWA EPTEHWN

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.