Factsheet for GSMUA_Achr6P10310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11760_001	Banana	nucleus	64.73	53.17
GSMUA_Achr10P...	Banana	nucleus	44.44	48.42
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	61.35	44.41
GSMUA_Achr7P12740_001	Banana	nucleus	47.34	42.98
GSMUA_Achr10P...	Banana	nucleus	49.76	41.7
OQU81036	Sorghum	nucleus	36.23	40.76
Zm00001d020804_P001	Maize	nucleus	48.79	38.7
HORVU5Hr1G070260.1	Barley	nucleus	49.28	38.2
GSMUA_Achr10P...	Banana	nucleus	48.31	38.02
TraesCS5B01G246700.1	Wheat	nucleus	49.28	37.92
TraesCS5D01G256200.1	Wheat	nucleus	49.28	37.78
TraesCS5A01G249000.1	Wheat	nucleus	49.28	37.78
Os09t0470500-01	Rice	nucleus	50.24	37.55
GSMUA_Achr3P06620_001	Banana	nucleus	49.28	37.23
Os08t0481400-01	Rice	nucleus	48.31	37.17
EER96901	Sorghum	nucleus	48.31	36.63
GSMUA_Achr9P14960_001	Banana	nucleus	46.38	34.16
Zm00001d005951_P001	Maize	nucleus	48.31	32.79
TraesCS4A01G405800.1	Wheat	nucleus	44.44	32.28
Os03t0188900-01	Rice	nucleus	44.44	29.58
TraesCS4D01G303500.1	Wheat	nucleus	44.44	29.11
TraesCS4B01G305300.1	Wheat	nucleus	44.44	29.11
Zm00001d030532_P002	Maize	nucleus	41.55	28.2
EER92730	Sorghum	nucleus	43.0	27.47
Zm00001d027991_P001	Maize	nucleus	43.0	27.3
Os10t0377300-01	Rice	nucleus	39.13	26.56
GSMUA_Achr6P36450_001	Banana	nucleus	29.47	26.29
GSMUA_Achr7P20950_001	Banana	nucleus	29.95	26.27
GSMUA_Achr5P05300_001	Banana	nucleus	24.64	24.76
GSMUA_Achr2P07420_001	Banana	nucleus	34.3	24.32
GSMUA_Achr9P14570_001	Banana	nucleus	30.43	23.95
GSMUA_Achr1P21620_001	Banana	nucleus	32.37	23.84
GSMUA_Achr1P16280_001	Banana	nucleus	25.12	23.64
GSMUA_Achr4P00550_001	Banana	nucleus	31.88	23.57
GSMUA_Achr3P21430_001	Banana	nucleus	29.95	23.31
GSMUA_Achr1P12270_001	Banana	nucleus	32.85	23.21
GSMUA_Achr7P09730_001	Banana	nucleus	33.33	23.0
GSMUA_Achr7P11600_001	Banana	nucleus	30.43	22.83
HORVU4Hr1G078410.5	Barley	nucleus, plastid	36.23	22.8
GSMUA_Achr10P...	Banana	nucleus	31.4	22.73
GSMUA_Achr8P25940_001	Banana	nucleus	31.4	22.65
GSMUA_Achr6P10660_001	Banana	nucleus	30.92	22.61
GSMUA_Achr3P06190_001	Banana	nucleus	30.43	22.26
Zm00001d048227_P001	Maize	extracellular, nucleus, plastid	38.16	21.35
GSMUA_Achr9P18360_001	Banana	nucleus	28.5	20.85
GSMUA_Achr10P...	Banana	nucleus	33.82	20.23
GSMUA_Achr1P18670_001	Banana	nucleus	26.57	18.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G10310_001	EnsemblPlants:GSMUA_Achr6P10310_001	EnsemblPlants:GSMUA_Achr6T10310_001	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0T5T0	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF196
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002964910	:	:	:

Description

Putative Homeobox-leucine zipper protein HOX20 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10310_001]

Coordinates

chr6:+:6889283..6889977

Molecular Weight (calculated)

23409.5 Da

IEP (calculated)

4.961

GRAVY (calculated)

-0.739

Length

207 amino acids

Sequence
(BLAST)

001: MEWDDELCSN GSSSLGQKKR RLSVDQVKAL EKDFEVMNKL DPERKVRLAH ELGLRPRQIA VWFQNRRARW KTKQLERDYG ALKARHDALK LDVDALRGDK
101: EALMDEMRAL KAKLADPATP KVEEDGRALG FRDGTSDTDS SAALNEEASP YSGALLDQHH SVLETKSHCS SIFMEEDGFL RGEELCGALF SEEQAPTLPW
201: CCTEGWE

Best Arabidopsis Sequence Match ( AT5G65310.2 )
(BLAST)

001: MILTDKQISP RPTTTGFLYS GAGDYSQMFD ALEDDGSLED LGGVGHASST AAEKKRRLGV EQVKALEKNF EIDNKLEPER KVKLAQELGL QPRQVAIWFQ
101: NRRARWKTKQ LERDYGVLKS NFDALKRNRD SLQRDNDSLL GQIKELKAKL NVEGVKGIEE NGALKAVEAN QSVMANNEVL ELSHRSPSPP PHIPTDAPTS
201: ELAFEMFSIF PRTENFRDDP ADSSDSSAVL NEEYSPNTVE AAGAVAATTV EMSTMGCFSQ FVKMEEHEDL FSGEEACKLF ADNEQWYCSD QWNS

Arabidopsis Description

ATHB-5Homeobox-leucine zipper protein ATHB-5 [Source:UniProtKB/Swiss-Prot;Acc:P46667]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.