CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0481400-01	Rice	nucleus	73.37	50.19
EER96901	Sorghum	nucleus	72.83	49.08
GSMUA_Achr7P12740_001	Banana	nucleus	53.8	43.42
GSMUA_Achr10P...	Banana	nucleus	44.57	43.16
GSMUA_Achr10P...	Banana	nucleus	51.09	38.06
GSMUA_Achr10P...	Banana	nucleus	54.35	38.02
GSMUA_Achr3P06620_001	Banana	nucleus	54.35	36.5
GSMUA_Achr6P10310_001	Banana	nucleus	40.76	36.23
GSMUA_Achr7P11760_001	Banana	nucleus	46.74	34.13
GSMUA_Achr9P14960_001	Banana	nucleus	51.09	33.45
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	50.54	32.52
KXG25140	Sorghum	nucleus	41.3	27.64
EES05814	Sorghum	nucleus	36.96	27.2
EER99231	Sorghum	nucleus	35.87	27.16
EER92730	Sorghum	nucleus	46.74	26.54
KXG30829	Sorghum	nucleus	45.11	24.34
EES11198	Sorghum	nucleus	35.33	24.07
EER98832	Sorghum	nucleus	40.22	23.34
EER92780	Sorghum	nucleus	40.76	21.13
EER94272	Sorghum	nucleus	41.3	20.99

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8055382	UniProt:A0A1Z5RCC1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	EnsemblPlants:OQU81036	ProteinID:OQU81036	ProteinID:OQU81036.1
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF248	SMART:SM00389	EnsemblPlantsGene:SORBI_3007G226600	SUPFAM:SSF46689	UniParc:UPI0001A879BB	RefSeq:XP_002445988.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:65372300..65378782

Molecular Weight (calculated)

20231.6 Da

IEP (calculated)

5.025

GRAVY (calculated)

-0.791

Length

184 amino acids

Sequence
(BLAST)

001: MKRPSGSISG GGGGGSPDLL PVVHSDDGFG GVGMEDADED MVPCNGIGFG EKKRRLSTEQ VRALERSFET ENNKLEPERK ARLARELGLQ PRQVAVWFQN
101: RRARWKTKQL ERDYAALRHS YDALRADHDE LRRDKDALLD EIKELKAKLG DDDAFSSVKE EPAASDVEVP AAGAAQGSVT ILDN

Best Arabidopsis Sequence Match ( AT2G22430.1 )
(BLAST)

001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N

Arabidopsis Description

ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.