Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P10310_001 | Banana | nucleus | 53.17 | 64.73 |
| GSMUA_Achr2P14750_001 | Banana | extracellular, nucleus | 73.41 | 64.69 |
| GSMUA_Achr10P... | Banana | nucleus | 46.43 | 61.58 |
| GSMUA_Achr7P12740_001 | Banana | nucleus | 44.84 | 49.56 |
| OQU81036 | Sorghum | nucleus | 34.13 | 46.74 |
| GSMUA_Achr10P... | Banana | nucleus | 45.63 | 46.56 |
| HORVU5Hr1G070260.1 | Barley | nucleus | 47.62 | 44.94 |
| Zm00001d020804_P001 | Maize | nucleus | 46.03 | 44.44 |
| TraesCS5B01G246700.1 | Wheat | nucleus | 47.22 | 44.24 |
| TraesCS5D01G256200.1 | Wheat | nucleus | 46.83 | 43.7 |
| TraesCS5A01G249000.1 | Wheat | nucleus | 46.83 | 43.7 |
| Os09t0470500-01 | Rice | nucleus | 48.02 | 43.68 |
| GSMUA_Achr3P06620_001 | Banana | nucleus | 46.03 | 42.34 |
| GSMUA_Achr10P... | Banana | nucleus | 44.05 | 42.21 |
| EER96901 | Sorghum | nucleus | 45.63 | 42.12 |
| Os08t0481400-01 | Rice | nucleus | 44.44 | 41.64 |
| Zm00001d005951_P001 | Maize | nucleus | 47.22 | 39.02 |
| GSMUA_Achr9P14960_001 | Banana | nucleus | 42.86 | 38.43 |
| TraesCS4A01G405800.1 | Wheat | nucleus | 38.49 | 34.04 |
| Os03t0188900-01 | Rice | nucleus | 40.48 | 32.8 |
| EER92730 | Sorghum | nucleus | 40.87 | 31.79 |
| Zm00001d027991_P001 | Maize | nucleus | 40.87 | 31.6 |
| TraesCS4D01G303500.1 | Wheat | nucleus | 38.89 | 31.01 |
| TraesCS4B01G305300.1 | Wheat | nucleus | 38.89 | 31.01 |
| Zm00001d030532_P002 | Maize | nucleus | 36.9 | 30.49 |
| GSMUA_Achr5P05300_001 | Banana | nucleus | 24.6 | 30.1 |
| Os10t0377300-01 | Rice | nucleus | 35.32 | 29.18 |
| GSMUA_Achr9P14570_001 | Banana | nucleus | 29.37 | 28.14 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 31.35 | 28.11 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 25.79 | 28.02 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 26.19 | 27.97 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 30.95 | 26.71 |
| GSMUA_Achr3P06190_001 | Banana | nucleus | 29.76 | 26.5 |
| GSMUA_Achr8P25940_001 | Banana | nucleus | 30.16 | 26.48 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 28.17 | 25.72 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 22.22 | 25.45 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 28.17 | 25.36 |
| GSMUA_Achr7P09730_001 | Banana | nucleus | 30.16 | 25.33 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 28.17 | 25.09 |
| HORVU4Hr1G078410.5 | Barley | nucleus, plastid | 32.54 | 24.92 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 28.97 | 24.91 |
| GSMUA_Achr10P... | Banana | nucleus | 27.78 | 24.48 |
| GSMUA_Achr9P18360_001 | Banana | nucleus | 27.38 | 24.38 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 25.4 | 24.06 |
| Zm00001d048227_P001 | Maize | extracellular, nucleus, plastid | 34.52 | 23.51 |
| GSMUA_Achr10P... | Banana | nucleus | 28.57 | 20.81 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 23.02 | 20.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr7G11760_001 | EnsemblPlants:GSMUA_Achr7P11760_001 | EnsemblPlants:GSMUA_Achr7T11760_001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | UniProt:M0TGR4 | PFAM:PF00046 |
| PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF300 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000296243B | SEG:seg | : | : |
Description
Putative Homeobox-leucine zipper protein HOX20 [Source:GMGC_GENE;Acc:GSMUA_Achr7G11760_001]
Coordinates
chr7:-:9358734..9362412
Molecular Weight (calculated)
28674.8 Da
IEP (calculated)
4.632
GRAVY (calculated)
-0.664
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQVRWRFVI QVEEKGKYEA VLVDGIEEVE CEEEEELCSN GPSGLGEKKR RLSVDQVKAL EKNFEVENKL DPERKVRLAR DLGLQPRQVA VWFQNRRARW
101: KTKQLERDYG ALKSLHDDLK LDCDALRRDK ELLLAEIREL KAKLADTGMD ATQSEIIKAV EEARAPLIYK DGASDSDSSV VFNDETSPYG GLVLHQNCLM
201: EFKPRSSSLS FENKAMDEGF LGGDELCSSL FSEQPAPSLS WYCSDPCEYK GD
101: KTKQLERDYG ALKSLHDDLK LDCDALRRDK ELLLAEIREL KAKLADTGMD ATQSEIIKAV EEARAPLIYK DGASDSDSSV VFNDETSPYG GLVLHQNCLM
201: EFKPRSSSLS FENKAMDEGF LGGDELCSSL FSEQPAPSLS WYCSDPCEYK GD
001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
Arabidopsis Description
ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.