Factsheet for GSMUA_Achr3P06620_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P12740_001	Banana	nucleus	53.65	64.47
GSMUA_Achr10P...	Banana	nucleus	52.55	58.3
GSMUA_Achr10P...	Banana	nucleus	54.74	57.03
OQU81036	Sorghum	nucleus	36.5	54.35
Zm00001d020804_P001	Maize	nucleus	50.73	53.26
Os09t0470500-01	Rice	nucleus	53.65	53.07
HORVU5Hr1G070260.1	Barley	nucleus	50.73	52.06
TraesCS5B01G246700.1	Wheat	nucleus	50.73	51.67
TraesCS5D01G256200.1	Wheat	nucleus	50.73	51.48
TraesCS5A01G249000.1	Wheat	nucleus	50.73	51.48
EER96901	Sorghum	nucleus	51.09	51.28
GSMUA_Achr9P14960_001	Banana	nucleus	52.19	50.89
GSMUA_Achr6P10310_001	Banana	nucleus	37.23	49.28
Os08t0481400-01	Rice	nucleus	46.72	47.58
GSMUA_Achr10P...	Banana	nucleus	32.85	47.37
GSMUA_Achr7P11760_001	Banana	nucleus	42.34	46.03
Zm00001d005951_P001	Maize	nucleus	50.0	44.92
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	45.26	43.36
TraesCS4A01G405800.1	Wheat	nucleus	36.5	35.09
Os03t0188900-01	Rice	nucleus	39.78	35.05
Zm00001d030532_P002	Maize	nucleus	36.86	33.11
Os10t0377300-01	Rice	nucleus	36.5	32.79
TraesCS4D01G303500.1	Wheat	nucleus	37.59	32.59
TraesCS4B01G305300.1	Wheat	nucleus	37.59	32.59
EER92730	Sorghum	nucleus	37.96	32.1
Zm00001d027991_P001	Maize	nucleus	37.59	31.6
GSMUA_Achr5P05300_001	Banana	nucleus	23.72	31.55
GSMUA_Achr6P36450_001	Banana	nucleus	26.64	31.47
GSMUA_Achr1P12270_001	Banana	nucleus	32.12	30.03
GSMUA_Achr2P07420_001	Banana	nucleus	31.39	29.45
GSMUA_Achr9P14570_001	Banana	nucleus	28.1	29.28
GSMUA_Achr1P21620_001	Banana	nucleus	29.93	29.18
GSMUA_Achr7P20950_001	Banana	nucleus	24.82	28.81
GSMUA_Achr7P11600_001	Banana	nucleus	28.83	28.62
GSMUA_Achr8P25940_001	Banana	nucleus	29.93	28.57
GSMUA_Achr3P06190_001	Banana	nucleus	28.83	27.92
GSMUA_Achr6P10660_001	Banana	nucleus	28.83	27.92
GSMUA_Achr7P09730_001	Banana	nucleus	30.29	27.67
GSMUA_Achr10P...	Banana	nucleus	28.83	27.62
GSMUA_Achr1P16280_001	Banana	nucleus	21.9	27.27
GSMUA_Achr4P00550_001	Banana	nucleus	27.74	27.14
GSMUA_Achr3P21430_001	Banana	nucleus	25.91	26.69
GSMUA_Achr9P18360_001	Banana	nucleus	26.64	25.8
Zm00001d048227_P001	Maize	extracellular, nucleus, plastid	34.31	25.41
HORVU4Hr1G078410.5	Barley	nucleus, plastid	30.29	25.23
GSMUA_Achr10P...	Banana	nucleus	31.02	24.57
GSMUA_Achr1P18670_001	Banana	nucleus	23.72	22.41

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr3G06620_001	EnsemblPlants:GSMUA_Achr3P06620_001	EnsemblPlants:GSMUA_Achr3T06620_001	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0SCC9	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF524
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000296CF2D	SEG:seg	:	:

Description

Homeobox-leucine zipper protein HOX20 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06620_001]

Coordinates

chr3:-:4452032..4453543

Molecular Weight (calculated)

30691.4 Da

IEP (calculated)

4.478

GRAVY (calculated)

-0.816

Length

274 amino acids

Sequence
(BLAST)

001: MKRPIADLDS LMPICPSAQE SGTYGGEFQP SMDGLEDEDD CGAAAAAAAP GEKKRRLSVE QVRALERSFE VENKLEPERK LRLAQDLGLQ PRQVAVWFQN
101: RRARWKTKQL ERDYTTLKAS YEALRLDYDS LHRDKESLLA QIEELKAKLT GEESLSVSSV KEEPVVSEAG TKAAASEEEP PALIYKDGSS DSDSSAVLND
201: AVLKDYDSRR RGMSSSQDAA PPATAELGSS TSSHHHMLKM EEEEEFLGRE EPFTSFFSDE QPPTLNWYYP DHWN

Best Arabidopsis Sequence Match ( AT2G22430.1 )
(BLAST)

001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N

Arabidopsis Description

ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.