CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027991_P001	Maize	nucleus	84.88	84.36
Os03t0188900-01	Rice	nucleus	67.28	70.1
TraesCS4D01G303500.1	Wheat	nucleus	65.74	67.41
TraesCS4B01G305300.1	Wheat	nucleus	65.74	67.41
TraesCS4A01G405800.1	Wheat	nucleus	59.26	67.37
Zm00001d048227_P001	Maize	extracellular, nucleus, plastid	66.36	58.11
OQU81036	Sorghum	nucleus	26.54	46.74
GSMUA_Achr10P...	Banana	nucleus	25.93	44.21
GSMUA_Achr6P10310_001	Banana	nucleus	27.47	43.0
HORVU4Hr1G078410.5	Barley	nucleus, plastid	42.9	42.25
GSMUA_Achr7P11760_001	Banana	nucleus	31.79	40.87
GSMUA_Achr7P12740_001	Banana	nucleus	28.4	40.35
EER96901	Sorghum	nucleus	33.33	39.56
GSMUA_Achr10P...	Banana	nucleus	29.94	39.27
GSMUA_Achr3P06620_001	Banana	nucleus	32.1	37.96
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	32.1	36.36
GSMUA_Achr10P...	Banana	nucleus	28.7	35.36
GSMUA_Achr9P14960_001	Banana	nucleus	29.01	33.45
KXG25140	Sorghum	nucleus	23.46	27.64
EES05814	Sorghum	nucleus	21.3	27.6
EER98832	Sorghum	nucleus	25.31	25.87
KXG30829	Sorghum	nucleus	26.85	25.51
EER99231	Sorghum	nucleus	16.98	22.63
EER94272	Sorghum	nucleus	25.0	22.38
EER92780	Sorghum	nucleus	24.38	22.25
EES11198	Sorghum	nucleus	18.21	21.85

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8057638	UniProt:C5WUU6	ncoils:Coil	EnsemblPlants:EER92730
ProteinID:EER92730	ProteinID:EER92730.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046
PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF300	SMART:SM00389
EnsemblPlantsGene:SORBI_3001G476300	SUPFAM:SSF46689	unigene:Sbi.9105	UniParc:UPI0001A829CD	RefSeq:XP_002465732.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:74847924..74850474

Molecular Weight (calculated)

35367.6 Da

IEP (calculated)

4.555

GRAVY (calculated)

-0.698

Length

324 amino acids

Sequence
(BLAST)

001: MRRQSKRPTA SRESPETVEK LAFAEEEALT AGKMEPDEGE MDVDVDDEEE DELAGGRGAA RSSPCGLGEK KRRLLQEQVR ALERCFETDN KLDPDRKARI
101: ARDLALQPRQ VAVWFQNRRA RWKTKTLERD FSALRARHDA LRADCDALRR DKDALAAEIR ELRQKLLSKA PEAAVKLEAT TGNDAAEERQ TTAGAPPAGV
201: CKDGSSDSDS SVVFNDVETS PYSGAAAFEQ PAFVGFDAPF LDTSAAAPTG CSSPPVFEPK WQHGPTTYPF DSYKTCAGGG YGFTEEWLAS SDVIGNDGAA
301: GFFSEDHASS LNFSWCASGV QGWE

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.