CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020804_P001	Maize	nucleus	91.21	95.4
TraesCS5B01G246700.1	Wheat	nucleus	78.75	79.93
TraesCS5D01G256200.1	Wheat	nucleus	78.75	79.63
TraesCS5A01G249000.1	Wheat	nucleus	78.75	79.63
Os09t0470500-01	Rice	nucleus	80.22	79.06
HORVU5Hr1G070260.1	Barley	nucleus	76.56	78.28
OQU81036	Sorghum	nucleus	49.08	72.83
GSMUA_Achr7P12740_001	Banana	nucleus	43.59	52.19
GSMUA_Achr10P...	Banana	nucleus	46.89	51.82
GSMUA_Achr3P06620_001	Banana	nucleus	51.28	51.09
GSMUA_Achr6P10310_001	Banana	nucleus	36.63	48.31
GSMUA_Achr10P...	Banana	nucleus	32.97	47.37
GSMUA_Achr10P...	Banana	nucleus	45.42	47.15
GSMUA_Achr9P14960_001	Banana	nucleus	47.25	45.91
GSMUA_Achr7P11760_001	Banana	nucleus	42.12	45.63
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	45.05	43.01
EER92730	Sorghum	nucleus	39.56	33.33
KXG25140	Sorghum	nucleus	31.87	31.64
EES05814	Sorghum	nucleus	26.74	29.2
EER99231	Sorghum	nucleus	24.91	27.98
EER98832	Sorghum	nucleus	32.23	27.76
EES11198	Sorghum	nucleus	25.27	25.56
EER94272	Sorghum	nucleus	33.7	25.41
KXG30829	Sorghum	nucleus	31.5	25.22
EER92780	Sorghum	nucleus	32.23	24.79

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8083263	UniProt:C5X323	ncoils:Coil	EnsemblPlants:EER96901
ProteinID:EER96901	ProteinID:EER96901.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF317	SMART:SM00389	EnsemblPlantsGene:SORBI_3002G233800	SUPFAM:SSF46689	unigene:Sbi.7425	UniParc:UPI0001A8369F
RefSeq:XP_002460380.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:62486832..62489116

Molecular Weight (calculated)

29314.9 Da

IEP (calculated)

4.503

GRAVY (calculated)

-0.609

Length

273 amino acids

Sequence
(BLAST)

001: MKRPRGGSPS SLAAMTNPDG DGYGVVGMEA ADADADADEE MMACGGGGGE KKRRLSAEQV RALERSFEVE NKLEPERKAR LARDLGLQPR QVAVWFQNRR
101: ARWKTKQLER DYAALRHSYD ALRHDHDALR RDKDALLAEI KELKAKLGDE EAAASFTSVK AEPAASDGPP PVGVGSSESD SSAVLNDAGP PVPEAQPVPE
201: VQGTLLDDAP CAVVAGASAA AANHGGVFFH GSFLKVEEDE TGLLDDDEPC GGFFAVEQPP PMAWWTEPTE HWN

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.