Factsheet for Zm00001d020804_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96901	Sorghum	nucleus	95.4	91.21
TraesCS5B01G246700.1	Wheat	nucleus	80.46	78.07
TraesCS5D01G256200.1	Wheat	nucleus	80.46	77.78
TraesCS5A01G249000.1	Wheat	nucleus	80.08	77.41
HORVU5Hr1G070260.1	Barley	nucleus	78.54	76.78
Os09t0470500-01	Rice	nucleus	81.23	76.53
Zm00001d005951_P001	Maize	nucleus	88.51	75.74
GSMUA_Achr7P12740_001	Banana	nucleus	44.83	51.32
GSMUA_Achr10P...	Banana	nucleus	48.28	51.01
GSMUA_Achr3P06620_001	Banana	nucleus	53.26	50.73
GSMUA_Achr6P10310_001	Banana	nucleus	38.7	48.79
GSMUA_Achr10P...	Banana	nucleus	34.87	47.89
GSMUA_Achr10P...	Banana	nucleus	47.13	46.77
GSMUA_Achr7P11760_001	Banana	nucleus	44.44	46.03
GSMUA_Achr9P14960_001	Banana	nucleus	48.66	45.2
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	46.74	42.66
Zm00001d030532_P002	Maize	nucleus	42.53	36.39
Zm00001d027991_P001	Maize	nucleus	41.76	33.44
Zm00001d032316_P001	Maize	nucleus	32.18	31.11
Zm00001d050310_P001	Maize	nucleus	32.18	30.88
Zm00001d021268_P001	Maize	nucleus	26.82	29.29
Zm00001d017422_P001	Maize	nucleus	25.29	28.09
Zm00001d005692_P001	Maize	nucleus	30.27	27.92
Zm00001d006195_P001	Maize	nucleus	25.29	27.05
Zm00001d048227_P001	Maize	extracellular, nucleus, plastid	38.31	27.03
Zm00001d025964_P001	Maize	nucleus	27.2	26.49
Zm00001d017920_P001	Maize	nucleus	33.33	26.36
Zm00001d002799_P001	Maize	nucleus	26.05	26.05
Zm00001d051749_P001	Maize	nucleus	33.72	25.96
Zm00001d014201_P001	Maize	nucleus	34.1	25.57
Zm00001d048312_P001	Maize	nucleus	33.33	25.29
Zm00001d033005_P001	Maize	nucleus	34.87	25.07
Zm00001d027852_P001	Maize	nucleus	32.95	25.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100272620	MapMan:15.5.3.1	UniProt:B4FAW9	EMBL:BT034257	EMBL:BT039062
EMBL:BT055374	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
ProteinID:ONM55630.1	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF317	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00017B62D7	EnsemblPlantsGene:Zm00001d020804
EnsemblPlants:Zm00001d020804_P001	EnsemblPlants:Zm00001d020804_T001	SEG:seg	:	:	:

Description

Homeobox-transcription factor 120Homeobox-leucine zipper protein ATHB-6

Coordinates

chr7:+:133411779..133413849

Molecular Weight (calculated)

28463.0 Da

IEP (calculated)

4.504

GRAVY (calculated)

-0.703

Length

261 amino acids

Sequence
(BLAST)

001: MKRPRGASPP LAAMTNPNDD GYGVVGMEAD ADADADEEMM ACGGGGEKKR RLSSEQVRAL ERSFEVENKL EPERKARLAR DLGLQPRQVA VWFQNRRARW
101: KTKQLERDYS ALRQSYDALR HDHDALRRDK DALLAEIKEL KAKLGDEEAA ASFTSVKAEP AASDGPPPVG VGSSESDSSA VLNDADPPVA EAPVPEVRGT
201: LLDAPGAVAA NHGGVFFHGS FLKVEEDETG LLDDDEPCGG FFSVEQPPPM AWWTEPTEHW N

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.