Factsheet for TraesCS5B01G246700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G256200.1	Wheat	nucleus	98.88	98.52
TraesCS5A01G249000.1	Wheat	nucleus	98.88	98.52
HORVU5Hr1G070260.1	Barley	nucleus	95.91	96.63
Zm00001d020804_P001	Maize	nucleus	78.07	80.46
EER96901	Sorghum	nucleus	79.93	78.75
Os09t0470500-01	Rice	nucleus	81.04	78.7
Zm00001d005951_P001	Maize	nucleus	75.84	66.89
GSMUA_Achr7P12740_001	Banana	nucleus	43.12	50.88
GSMUA_Achr3P06620_001	Banana	nucleus	51.67	50.73
GSMUA_Achr10P...	Banana	nucleus	45.72	49.8
GSMUA_Achr6P10310_001	Banana	nucleus	37.92	49.28
GSMUA_Achr10P...	Banana	nucleus	33.83	47.89
GSMUA_Achr7P11760_001	Banana	nucleus	44.24	47.22
GSMUA_Achr10P...	Banana	nucleus	44.98	46.01
GSMUA_Achr9P14960_001	Banana	nucleus	46.84	44.84
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	44.98	42.31
TraesCS4B01G305300.1	Wheat	nucleus	39.41	33.54
TraesCS6B01G284300.1	Wheat	nucleus	26.39	31.42
TraesCS5B01G197700.1	Wheat	nucleus	31.6	28.43
TraesCS4B01G287600.1	Wheat	nucleus	34.2	27.79
TraesCS5B01G317400.1	Wheat	nucleus	25.28	27.31
TraesCS2B01G407600.1	Wheat	nucleus	24.91	25.77
TraesCS6B01G321100.1	Wheat	nucleus	32.71	25.66

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF317	SMART:SM00389	SUPFAM:SSF46689
EnsemblPlantsGene:TraesCS5B01G246700	EnsemblPlants:TraesCS5B01G246700.1	TIGR:cd00086	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:428461602..428462604

Molecular Weight (calculated)

28886.4 Da

IEP (calculated)

4.431

GRAVY (calculated)

-0.755

Length

269 amino acids

Sequence
(BLAST)

001: MKRPGGGNPS SLHQMASPND MDYGVVGMEA DGDAEEEMMA CGGGGGCGGG EKKRRLSAEQ VRALERSFEV ENKLEPERKA RLARDLGLQP RQVAVWFQNR
101: RARWKTKQLE RDYNALRHSY DALRVDHDAL RRDKEALLAE IKDLKGKLGD EEAAASFTSV KEEPAASDGP PPAGMGSSDS DSSGVLNDTD ATGATPTEEA
201: PAPEMGTLLG GPGAAGAAAA GHGQMFLHGN FLKVEEDETG FLDDEEPCGG FFADEPPLAW WTEPTDPWK

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.