Factsheet for GSMUA_Achr1P12270_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P07420_001	Banana	nucleus	79.86	80.14
GSMUA_Achr1P21620_001	Banana	nucleus	75.77	79.0
GSMUA_Achr6P10660_001	Banana	nucleus	69.62	72.08
GSMUA_Achr7P11600_001	Banana	nucleus	66.55	70.65
GSMUA_Achr10P...	Banana	nucleus	67.58	69.23
VIT_01s0026g01950.t01	Wine grape	nucleus	59.39	61.05
KRG99129	Soybean	nucleus	57.34	60.22
KRH45876	Soybean	nucleus	57.0	59.64
KRH69308	Soybean	nucleus	59.73	59.32
KRH74821	Soybean	nucleus	58.7	59.11
GSMUA_Achr3P21430_001	Banana	nucleus	52.22	57.52
GSMUA_Achr7P20950_001	Banana	nucleus	46.08	57.2
GSMUA_Achr6P36450_001	Banana	nucleus	45.05	56.9
GSMUA_Achr4P00550_001	Banana	nucleus	53.24	55.71
PGSC0003DMT400002259	Potato	nucleus	44.37	55.32
PGSC0003DMT400065805	Potato	nucleus	57.34	54.9
Solyc05g007180.2.1	Tomato	nucleus	57.0	54.75
Solyc01g010600.2.1	Tomato	nucleus	45.05	54.32
CDY44091	Canola	nucleus	48.81	53.76
VIT_14s0108g00390.t01	Wine grape	nucleus	51.88	53.71
KRG99070	Soybean	nucleus	31.06	52.91
Bra007881.1-P	Field mustard	nucleus	50.85	52.28
TraesCS4B01G287600.1	Wheat	nucleus	59.04	52.27
CDY38759	Canola	nucleus	50.51	52.11
Zm00001d027852_P001	Maize	nucleus	60.75	51.74
Bra016266.1-P	Field mustard	nucleus	50.51	51.39
AT1G69780.1	Thale cress	nucleus	51.54	51.36
CDY11659	Canola	nucleus	50.17	51.04
TraesCS4D01G286400.2	Wheat	nucleus	59.04	51.03
TraesCS4A01G016600.1	Wheat	nucleus, plastid	58.7	50.89
EER92780	Sorghum	nucleus	60.75	50.14
Zm00001d048312_P001	Maize	nucleus	58.7	50.0
CDY70870	Canola	nucleus	50.85	49.5
Bra003980.1-P	Field mustard	nucleus	41.98	48.81
CDY48391	Canola	nucleus	41.98	48.81
CDY23547	Canola	nucleus	46.42	48.57
HORVU4Hr1G075180.3	Barley	nucleus, plastid	58.7	43.65
EER94272	Sorghum	nucleus	52.22	42.27
Os10t0404900-01	Rice	nucleus	51.19	42.25
Zm00001d014201_P001	Maize	nucleus	50.17	42.24
Zm00001d033005_P001	Maize	nucleus	49.83	40.22
GSMUA_Achr10P...	Banana	nucleus	23.89	36.84
HORVU4Hr1G075170.1	Barley	nucleus	32.08	36.72
GSMUA_Achr5P05300_001	Banana	nucleus	23.89	33.98
GSMUA_Achr7P12740_001	Banana	nucleus	26.28	33.77
GSMUA_Achr6P10310_001	Banana	nucleus	23.21	32.85
GSMUA_Achr3P06620_001	Banana	nucleus	30.03	32.12
GSMUA_Achr10P...	Banana	nucleus	27.99	31.18
GSMUA_Achr10P...	Banana	nucleus	25.26	29.96
GSMUA_Achr7P09730_001	Banana	nucleus	30.38	29.67
GSMUA_Achr9P14570_001	Banana	nucleus	26.62	29.66
GSMUA_Achr7P11760_001	Banana	nucleus	24.91	28.97
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	26.62	27.27
GSMUA_Achr3P06190_001	Banana	nucleus	26.28	27.21
GSMUA_Achr8P25940_001	Banana	nucleus	25.26	25.78
GSMUA_Achr9P14960_001	Banana	nucleus	24.57	25.62
GSMUA_Achr9P18360_001	Banana	nucleus	24.57	25.44
GSMUA_Achr10P...	Banana	nucleus	29.69	25.14
GSMUA_Achr1P16280_001	Banana	nucleus	18.09	24.09
GSMUA_Achr1P18670_001	Banana	nucleus	19.45	19.66

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr1G12270_001	EnsemblPlants:GSMUA_Achr1P12270_001	EnsemblPlants:GSMUA_Achr1T12270_001	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0RZ85	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF176
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002956C42	SEG:seg	:	:

Description

Putative Homeobox-leucine zipper protein HOX21 [Source:GMGC_GENE;Acc:GSMUA_Achr1G12270_001]

Coordinates

chr1:-:9368697..9369960

Molecular Weight (calculated)

33413.2 Da

IEP (calculated)

6.291

GRAVY (calculated)

-0.851

Length

293 amino acids

Sequence
(BLAST)

001: MSCNGMASSS SSFFSSNFVL PMQTLHEEQH QIPNPVSPHP HTIPCNNLQD LRVMAPMLGK RSMSFSGIEN GEEMNADDDL SDDGMQTGEK KRRLKMEQVR
101: TLEKSFEQGN KLEPERKMQL AGALGLQPRQ VAIWFQNRRA RWKTKQLEKD YDVLKRQFEA MKSENESLHE QNKKLQAEIL SLKRRETSEM INLNKETEGS
201: SSNRSENSSE INLDLSRASV TESPLNPNQS LPIFHSVRPA DVDHLLLHSS SRPELQCPKI DHGVTEGSFS NLLCSMEDQS ASFWSWSDQH NFH

Best Arabidopsis Sequence Match ( AT5G15150.1 )
(BLAST)

001: MYMYEEERNN INNNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG GNYMMNRSMS FTGVSDHHHL TQKSPTTTNN MNDQDQVGEE
101: DNLSDDGSHM MLGEKKKRLN LEQVRALEKS FELGNKLEPE RKMQLAKALG LQPRQIAIWF QNRRARWKTK QLERDYDSLK KQFDVLKSDN DSLLAHNKKL
201: HAELVALKKH DRKESAKIKR EFAEASWSNN GSTENNHNNN SSDANHVSMI KDLFPSSIRS ATATTTSTHI DHQIVQDQDQ GFCNMFNGID ETTSASYWAW
301: PDQQQQHHNH HQFN

Arabidopsis Description

HAT7Homeobox-leucine zipper protein HAT7 [Source:UniProtKB/Swiss-Prot;Acc:Q00466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.