Factsheet for VIT_14s0108g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g01950.t01	Wine grape	nucleus	70.32	69.82
KRG99129	Soybean	nucleus	65.72	66.67
KRH45876	Soybean	nucleus	65.37	66.07
KRH74821	Soybean	nucleus	66.78	64.95
KRG99070	Soybean	nucleus	39.22	64.53
KRH69308	Soybean	nucleus	66.43	63.73
Solyc05g007180.2.1	Tomato	nucleus	64.66	60.0
PGSC0003DMT400002259	Potato	nucleus	49.82	60.0
PGSC0003DMT400065805	Potato	nucleus	64.31	59.48
GSMUA_Achr6P36450_001	Banana	nucleus	46.64	56.9
GSMUA_Achr1P21620_001	Banana	nucleus	56.18	56.58
Solyc01g010600.2.1	Tomato	nucleus	47.35	55.14
GSMUA_Achr7P20950_001	Banana	nucleus	45.23	54.24
GSMUA_Achr10P...	Banana	nucleus	54.77	54.2
GSMUA_Achr4P00550_001	Banana	nucleus	53.0	53.57
GSMUA_Achr2P07420_001	Banana	nucleus	55.12	53.42
CDY44091	Canola	nucleus	49.82	53.01
GSMUA_Achr3P21430_001	Banana	nucleus	48.76	51.88
GSMUA_Achr1P12270_001	Banana	nucleus	53.71	51.88
GSMUA_Achr7P11600_001	Banana	nucleus	50.53	51.81
AT1G69780.1	Thale cress	nucleus	53.71	51.7
Bra007881.1-P	Field mustard	nucleus	51.59	51.23
CDY38759	Canola	nucleus	51.24	51.06
Bra003980.1-P	Field mustard	nucleus	45.23	50.79
CDY48391	Canola	nucleus	45.23	50.79
Bra016266.1-P	Field mustard	nucleus	51.59	50.69
GSMUA_Achr6P10660_001	Banana	nucleus	50.18	50.18
CDY11659	Canola	nucleus	50.88	50.0
CDY23547	Canola	nucleus	49.12	49.64
CDY70870	Canola	nucleus	51.94	48.84
TraesCS4B01G287600.1	Wheat	nucleus	54.06	46.22
Zm00001d027852_P001	Maize	nucleus	55.83	45.93
TraesCS4D01G286400.2	Wheat	nucleus	54.06	45.13
EER92780	Sorghum	nucleus	56.54	45.07
Zm00001d048312_P001	Maize	nucleus	54.77	45.06
TraesCS4A01G016600.1	Wheat	nucleus, plastid	53.0	44.38
HORVU4Hr1G075180.3	Barley	nucleus, plastid	54.06	38.83
HORVU4Hr1G075170.1	Barley	nucleus	33.57	37.11
Os10t0404900-01	Rice	nucleus	46.29	36.9
EER94272	Sorghum	nucleus	44.52	34.81
Zm00001d014201_P001	Maize	nucleus	42.4	34.48
VIT_10s0003g00380.t01	Wine grape	nucleus	20.14	33.33
Zm00001d033005_P001	Maize	nucleus	42.76	33.33
VIT_19s0014g02110.t01	Wine grape	nucleus	17.67	31.06
VIT_14s0066g01440.t01	Wine grape	nucleus	28.98	30.04
VIT_01s0026g01550.t01	Wine grape	nucleus	33.57	29.59
VIT_08s0007g04200.t01	Wine grape	nucleus	22.61	29.09
VIT_17s0000g05630.t01	Wine grape	nucleus	31.45	28.08
VIT_07s0191g00180.t01	Wine grape	nucleus	31.8	26.87
VIT_18s0001g06430.t01	Wine grape	nucleus	27.21	26.83
VIT_02s0025g02590.t01	Wine grape	nucleus	17.67	26.04
VIT_16s0098g01170.t01	Wine grape	nucleus	19.79	24.89
VIT_15s0048g02870.t01	Wine grape	nucleus	20.85	24.28

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100853126	wikigene:100853126	MapMan:15.5.3.1	ProteinID:CBI22185	ProteinID:CBI22185.3
ncoils:Coil	UniProt:D7SX88	EMBL:FN595239	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100853126	wikigene:LOC100853126	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF264	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI00015C9D9D	ArrayExpress:VIT_14s0108g00390	EnsemblPlantsGene:VIT_14s0108g00390	EnsemblPlants:VIT_14s0108g00390.t01	RefSeq:XP_003633842	RefSeq:XP_003633842.1

Description

No Description!

Coordinates

chr14:-:29151629..29152817

Molecular Weight (calculated)

32097.7 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.719

Length

283 amino acids

Sequence
(BLAST)

001: MAFLPTDFLF QTHLEDHPPY TSHTGLPSCT PQDFHGVIPV LMKRSMSFSG VDGCEEVHGD DDFSDDGSQA GEKKRRLNLE QVKTLEKNFE LGNKLEPERK
101: MQLARTLGLQ PRQIAIWFQN RRARWKTKQL EKDYDLLKRQ FEAVKADNDA LQAQNKKLHA ELLALKSREP KGVGPINLNK ETDQISWSNG SEHSSGINLD
201: ISRTTLINSP VSSQLSSKQF FPSSLRPASI TQLLQGSPRS DIHCQKIDQI VQDESFCNIF SGISDQSGLW AWPEQDHFHQ NQA

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.