Factsheet for VIT_18s0001g06430.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0191g00180.t01	Wine grape	nucleus	52.61	45.07
VIT_08s0007g04200.t01	Wine grape	nucleus	26.48	34.55
PGSC0003DMT400079230	Potato	nucleus	33.45	32.88
VIT_02s0025g02590.t01	Wine grape	nucleus	21.6	32.29
VIT_15s0048g02870.t01	Wine grape	nucleus	27.18	32.1
VIT_19s0014g02110.t01	Wine grape	nucleus	17.77	31.68
VIT_14s0066g01440.t01	Wine grape	nucleus	29.62	31.14
Solyc04g074700.2.1	Tomato	nucleus	33.1	30.65
VIT_10s0003g00380.t01	Wine grape	nucleus	18.12	30.41
VIT_17s0000g05630.t01	Wine grape	nucleus	33.45	30.28
VIT_01s0026g01550.t01	Wine grape	nucleus	32.4	28.97
VIT_01s0026g01950.t01	Wine grape	nucleus	27.53	27.72
VIT_16s0098g01170.t01	Wine grape	nucleus	21.6	27.56
VIT_14s0108g00390.t01	Wine grape	nucleus	26.83	27.21

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100255823	wikigene:100255823	MapMan:15.5.3.1	ProteinID:CCB45600	ProteinID:CCB45600.1
ncoils:Coil	UniProt:F6H0X8	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100255823	wikigene:LOC100255823	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF196	SMART:SM00389	SUPFAM:SSF46689
TIGR:TC61480	UniParc:UPI00019853A9	ArrayExpress:VIT_18s0001g06430	EnsemblPlantsGene:VIT_18s0001g06430	EnsemblPlants:VIT_18s0001g06430.t01	unigene:Vvi.14123
RefSeq:XP_002285743	RefSeq:XP_002285743.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:4806981..4808947

Molecular Weight (calculated)

32575.0 Da

IEP (calculated)

4.792

GRAVY (calculated)

-0.758

Length

287 amino acids

Sequence
(BLAST)

001: MKRFSSSVSL APLVSMCSPK EGKNSKNYPV YDSEFQAMLD SFDEEDCAEE TGLITEKKKR LSFDQVKALE RSFEIENKLE PERKVKIAEE LGLKPRQVAI
101: WFQNRRARWK TKQLERDYGI LKANYDALKL DYESLEQEKE ALVAELRELK AKLQGGNMEL NQSVKEEALV SESENNVSEQ GKNNGNISGI HGLGDFKDGS
201: SDSDSSGVLK NESNFNAQLM MSPASSSSLR LNCASLSSPS PMNWFPSKAF QHQFGRMEEQ SFFSAEEPCN FFWGDQAPSL HWYFPDQ

Best Arabidopsis Sequence Match ( AT2G22430.1 )
(BLAST)

001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N

Arabidopsis Description

ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.