Factsheet for VIT_08s0007g04200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20007	Soybean	nucleus	64.55	64.25
KRH32628	Soybean	nucleus	62.73	61.33
Solyc09g008810.2.1	Tomato	nucleus	65.91	60.17
PGSC0003DMT400006949	Potato	nucleus	65.91	59.67
KRG96107	Soybean	nucleus	56.36	57.94
KRH67812	Soybean	nucleus	58.18	54.94
CDY11269	Canola	nucleus	48.64	49.08
CDX80887	Canola	nucleus	48.18	48.62
AT5G03790.1	Thale cress	nucleus	50.91	47.66
CDY04896	Canola	nucleus	48.18	46.7
CDY10356	Canola	nucleus	48.64	46.52
CDX70284	Canola	nucleus	48.64	46.52
Bra009510.1-P	Field mustard	nucleus	48.64	46.52
CDY71047	Canola	nucleus	48.18	46.09
AT2G36610.1	Thale cress	nucleus	38.64	45.95
Bra028820.1-P	Field mustard	nucleus	47.27	45.81
CDY33168	Canola	nucleus	35.91	41.8
CDX75029	Canola	nucleus	35.45	41.71
Bra005259.1-P	Field mustard	nucleus	35.45	41.71
CDX70283	Canola	nucleus	40.0	40.18
CDY42007	Canola	nucleus	39.55	39.73
VIT_19s0014g02110.t01	Wine grape	nucleus	23.18	31.68
VIT_14s0066g01440.t01	Wine grape	nucleus	36.36	29.3
VIT_10s0003g00380.t01	Wine grape	nucleus	21.36	27.49
VIT_18s0001g06430.t01	Wine grape	nucleus	34.55	26.48
VIT_01s0026g01550.t01	Wine grape	nucleus	34.55	23.68
VIT_02s0025g02590.t01	Wine grape	nucleus	20.45	23.44
VIT_14s0108g00390.t01	Wine grape	nucleus	29.09	22.61
VIT_17s0000g05630.t01	Wine grape	nucleus	32.27	22.4
VIT_15s0048g02870.t01	Wine grape	nucleus	24.55	22.22
VIT_01s0026g01950.t01	Wine grape	nucleus	28.64	22.11
VIT_07s0191g00180.t01	Wine grape	nucleus	32.27	21.19
VIT_16s0098g01170.t01	Wine grape	nucleus	21.36	20.89

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100251028	wikigene:100251028	MapMan:15.5.3.1	ProteinID:CBI30218	ProteinID:CBI30218.3
ncoils:Coil	UniProt:D7TIZ2	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100251028
wikigene:LOC100251028	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF287	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0001983E54	ArrayExpress:VIT_08s0007g04200	EnsemblPlantsGene:VIT_08s0007g04200
EnsemblPlants:VIT_08s0007g04200.t01	RefSeq:XP_002283931	RefSeq:XP_002283931.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:18187600..18188819

Molecular Weight (calculated)

25824.6 Da

IEP (calculated)

9.077

GRAVY (calculated)

-0.965

Length

220 amino acids

Sequence
(BLAST)

001: MDWNGNLRPF VSRPESSFTF LYNYNYDPYP GMEVKHPVSA ETAHAMVRPM DKSSYGNQEK KKRLTNEQLE SLERSFQEEI KLEPDRKMKL ARELGLQPRQ
101: IAVWFQNRRA RWKTKELERL YDVLKQEYDL MSKEKQKLQE EVSKLKGILR EQATRKQVSM GYTEVSGEET VESTSITIRS SNKPRGLSHQ IADCNYVYTA
201: EEYNPVSPPY WGVLPPYPST

Best Arabidopsis Sequence Match ( AT5G03790.1 )
(BLAST)

001: MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAG NSYTPGDTQT GPVISVPESE KIMNAYRFPN NNNEMIKKKR LTSGQLASLE RSFQEEIKLD
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP

Arabidopsis Description

ATHB-51Putative homeobox-leucine zipper protein ATHB-51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.