Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80887 | Canola | nucleus | 95.41 | 95.41 |
| CDY04896 | Canola | nucleus | 81.65 | 78.41 |
| AT5G03790.1 | Thale cress | nucleus | 83.94 | 77.87 |
| CDY71047 | Canola | nucleus | 81.65 | 77.39 |
| CDX70284 | Canola | nucleus | 80.73 | 76.52 |
| CDY10356 | Canola | nucleus | 80.73 | 76.52 |
| CDX70283 | Canola | nucleus | 63.3 | 63.01 |
| CDY42007 | Canola | nucleus | 61.93 | 61.64 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 49.08 | 48.64 |
| Solyc09g008810.2.1 | Tomato | nucleus | 49.54 | 44.81 |
| PGSC0003DMT400006949 | Potato | nucleus | 49.54 | 44.44 |
| CDX75029 | Canola | nucleus | 35.78 | 41.71 |
| CDY33168 | Canola | nucleus | 34.86 | 40.21 |
| CDY48942 | Canola | nucleus | 23.85 | 32.1 |
| CDY69536 | Canola | nucleus | 21.1 | 29.49 |
| CDY28803 | Canola | nucleus | 20.64 | 28.85 |
| CDY11680 | Canola | nucleus | 23.39 | 28.65 |
| CDX67451 | Canola | nucleus | 23.39 | 28.65 |
| CDX99719 | Canola | nucleus | 21.56 | 24.1 |
| CDY71532 | Canola | nucleus | 23.85 | 22.81 |
| CDY69290 | Canola | nucleus | 26.15 | 22.8 |
| CDX89136 | Canola | nucleus | 23.85 | 22.71 |
| CDX76591 | Canola | nucleus | 22.94 | 21.83 |
| CDY57869 | Canola | nucleus | 22.94 | 21.74 |
| CDY28673 | Canola | nucleus | 27.06 | 21.69 |
| CDY52767 | Canola | nucleus | 24.77 | 21.26 |
| CDY46427 | Canola | nucleus | 24.77 | 21.26 |
| CDY37519 | Canola | nucleus | 25.23 | 21.15 |
| CDY49056 | Canola | nucleus | 25.23 | 20.91 |
| CDY69034 | Canola | nucleus | 25.69 | 20.9 |
| CDY25596 | Canola | nucleus | 25.23 | 20.68 |
| CDY70306 | Canola | nucleus | 27.52 | 20.55 |
| CDY41547 | Canola | nucleus | 23.85 | 20.47 |
| CDX70596 | Canola | nucleus | 28.44 | 20.39 |
| CDY69618 | Canola | nucleus | 28.44 | 20.33 |
| CDY44091 | Canola | nucleus | 24.77 | 20.3 |
| CDX78614 | Canola | nucleus | 27.98 | 20.27 |
| CDY48391 | Canola | nucleus | 23.39 | 20.24 |
| CDY27308 | Canola | nucleus | 21.1 | 20.09 |
| CDX80037 | Canola | nucleus | 23.39 | 20.08 |
| CDX85054 | Canola | nucleus | 27.98 | 19.87 |
| CDX69546 | Canola | nucleus | 27.98 | 19.74 |
| CDY38759 | Canola | nucleus | 25.69 | 19.72 |
| CDY67332 | Canola | nucleus | 27.52 | 19.67 |
| CDY23547 | Canola | nucleus | 25.23 | 19.64 |
| CDY11659 | Canola | nucleus | 25.69 | 19.44 |
| CDY37819 | Canola | nucleus | 27.52 | 19.35 |
| CDY33967 | Canola | nucleus | 27.52 | 19.35 |
| CDY25597 | Canola | nucleus | 26.15 | 19.06 |
| CDY70870 | Canola | nucleus | 26.15 | 18.94 |
| CDY39476 | Canola | nucleus | 24.31 | 18.79 |
| CDX76923 | Canola | nucleus | 26.61 | 18.71 |
| CDX89467 | Canola | nucleus | 25.69 | 18.67 |
| CDX69357 | Canola | nucleus | 25.23 | 18.64 |
| CDX75697 | Canola | nucleus | 25.23 | 18.64 |
| CDY28696 | Canola | nucleus | 22.48 | 18.56 |
| CDY13761 | Canola | nucleus | 26.15 | 18.33 |
| CDX90376 | Canola | nucleus | 22.94 | 17.54 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078FE97 | UniProt:A0A078FE97 | EnsemblPlants:CDY11269 | ProteinID:CDY11269 |
| ProteinID:CDY11269.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00049301001 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF287 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE0E53 | : | : | : | : |
Description
BnaA03g01050DBnaA03g01050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FE97]
Coordinates
chrLK032010:+:467928..469423
Molecular Weight (calculated)
25133.8 Da
IEP (calculated)
9.198
GRAVY (calculated)
-0.704
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MEWSTTNNLE NMRVAFMLPT WPESSSFNSL HSFNYDPYAA GNSYTPADTQ TGPVISVPET EKIINAYRLP SNNNEITKKK RLTSGQLASL ERSFQDEIKL
101: DTDRKLKLSR ELGLQPRQIA VWFQNRRARW KAKQLEQLYD SLRQEYDVVS REKQMLHEEV KKLRAILRDH GLIKKQISGV TSGEETTEIP SVVATKVYGT
201: DQYNNQMVVA SSCWLPYP
101: DTDRKLKLSR ELGLQPRQIA VWFQNRRARW KAKQLEQLYD SLRQEYDVVS REKQMLHEEV KKLRAILRDH GLIKKQISGV TSGEETTEIP SVVATKVYGT
201: DQYNNQMVVA SSCWLPYP
001: MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAG NSYTPGDTQT GPVISVPESE KIMNAYRFPN NNNEMIKKKR LTSGQLASLE RSFQEEIKLD
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVC VLYCTKLKSW DLITYYRFLN LSLKVLILSD CPP
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVC VLYCTKLKSW DLITYYRFLN LSLKVLILSD CPP
Arabidopsis Description
ATHB-51Putative homeobox-leucine zipper protein ATHB-51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.