Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67451 | Canola | nucleus | 96.63 | 96.63 |
| CDY48942 | Canola | nucleus | 32.58 | 35.8 |
| CDY28803 | Canola | nucleus | 29.21 | 33.33 |
| CDY69536 | Canola | nucleus | 28.65 | 32.69 |
| CDY69290 | Canola | nucleus | 38.2 | 27.2 |
| CDX99719 | Canola | nucleus | 29.21 | 26.67 |
| CDY37519 | Canola | nucleus | 38.76 | 26.54 |
| CDY25596 | Canola | nucleus | 39.33 | 26.32 |
| CDY49056 | Canola | nucleus | 38.2 | 25.86 |
| CDY28673 | Canola | nucleus | 39.33 | 25.74 |
| CDY69034 | Canola | nucleus | 38.2 | 25.37 |
| CDX90376 | Canola | nucleus | 40.45 | 25.26 |
| CDY39476 | Canola | nucleus | 39.89 | 25.18 |
| CDY70306 | Canola | nucleus | 41.01 | 25.0 |
| CDX75029 | Canola | nucleus | 25.84 | 24.6 |
| CDY71532 | Canola | nucleus | 31.46 | 24.56 |
| CDX89136 | Canola | nucleus | 31.46 | 24.45 |
| CDX75697 | Canola | nucleus | 40.45 | 24.41 |
| CDY33168 | Canola | nucleus | 25.84 | 24.34 |
| CDX89467 | Canola | nucleus | 41.01 | 24.33 |
| CDX78614 | Canola | nucleus | 41.01 | 24.25 |
| CDY25597 | Canola | nucleus | 40.45 | 24.08 |
| CDX69357 | Canola | nucleus | 39.89 | 24.07 |
| CDY46427 | Canola | nucleus | 34.27 | 24.02 |
| CDX85054 | Canola | nucleus | 41.01 | 23.78 |
| CDX70596 | Canola | nucleus | 40.45 | 23.68 |
| CDX69546 | Canola | nucleus | 41.01 | 23.62 |
| CDY52767 | Canola | nucleus | 33.71 | 23.62 |
| CDX76923 | Canola | nucleus | 41.01 | 23.55 |
| CDY13761 | Canola | nucleus | 41.01 | 23.47 |
| CDY48391 | Canola | nucleus | 33.15 | 23.41 |
| CDX80887 | Canola | nucleus | 28.65 | 23.39 |
| CDY11269 | Canola | nucleus | 28.65 | 23.39 |
| CDY38759 | Canola | nucleus | 37.08 | 23.24 |
| CDX76591 | Canola | nucleus | 29.78 | 23.14 |
| CDX70284 | Canola | nucleus | 29.78 | 23.04 |
| CDY10356 | Canola | nucleus | 29.78 | 23.04 |
| CDY57869 | Canola | nucleus | 29.78 | 23.04 |
| CDY44091 | Canola | nucleus | 34.27 | 22.93 |
| CDY11659 | Canola | nucleus | 37.08 | 22.92 |
| CDY23547 | Canola | nucleus | 35.96 | 22.86 |
| CDY42007 | Canola | nucleus | 28.09 | 22.83 |
| CDX70283 | Canola | nucleus | 28.09 | 22.83 |
| CDY28696 | Canola | nucleus | 33.71 | 22.73 |
| CDY04896 | Canola | nucleus | 28.65 | 22.47 |
| CDX80037 | Canola | nucleus | 32.02 | 22.44 |
| CDY71047 | Canola | nucleus | 28.65 | 22.17 |
| CDY41547 | Canola | nucleus | 31.46 | 22.05 |
| CDY33967 | Canola | nucleus | 38.2 | 21.94 |
| CDY37819 | Canola | nucleus | 38.2 | 21.94 |
| CDY70870 | Canola | nucleus | 36.52 | 21.59 |
| CDY67332 | Canola | nucleus | 36.52 | 21.31 |
| CDY69618 | Canola | nucleus | 35.96 | 20.98 |
| CDY27308 | Canola | nucleus | 26.97 | 20.96 |
| Os03t0170600-01 | Rice | cytosol, nucleus | 5.06 | 12.86 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078FBB5 | UniProt:A0A078FBB5 | EnsemblPlants:CDY11680 | ProteinID:CDY11680 |
| ProteinID:CDY11680.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00049841001 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo |
| PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF136 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEFDB5 | : | : |
Description
BnaC06g12880DBnaC06g12880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBB5]
Coordinates
chrLK032013:-:279038..279841
Molecular Weight (calculated)
20635.4 Da
IEP (calculated)
6.796
GRAVY (calculated)
-0.851
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPNYDQESR SRSAPTGEID NQPAEKKRRL TVEQVNMLEK SFEEENKLEP ERKTELAKML GLPQRQVAVW FQNRKARCKI KKIERDYDVL KACYDSLLAK
101: HESVISENEK LKSKVFTLTE MLLPAAHQTQ RNLQGKLNSK GDDETMSSST ALVPLANDHY FTNVDESFGW WVWPSNLM
101: HESVISENEK LKSKVFTLTE MLLPAAHQTQ RNLQGKLNSK GDDETMSSST ALVPLANDHY FTNVDESFGW WVWPSNLM
001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
Arabidopsis Description
HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.