Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024377.1-P | Field mustard | nucleus | 97.05 | 97.05 |
| CDY67332 | Canola | nucleus | 96.39 | 96.39 |
| CDY48942 | Canola | nucleus | 47.87 | 90.12 |
| CDY37819 | Canola | nucleus | 82.3 | 80.97 |
| CDY33967 | Canola | nucleus | 82.3 | 80.97 |
| AT5G65310.1 | Thale cress | nucleus | 79.67 | 77.88 |
| KRH43132 | Soybean | nucleus | 48.2 | 47.12 |
| KRH59287 | Soybean | nucleus | 47.21 | 46.91 |
| CDY25597 | Canola | nucleus | 45.25 | 46.15 |
| CDX89467 | Canola | nucleus | 45.25 | 46.0 |
| CDY25596 | Canola | nucleus | 40.0 | 45.86 |
| KRH31331 | Soybean | nucleus | 47.21 | 45.86 |
| CDY39476 | Canola | nucleus | 41.64 | 45.04 |
| Solyc05g051460.2.1 | Tomato | nucleus | 45.9 | 44.73 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 48.85 | 44.48 |
| KRG97544 | Soybean | nucleus | 46.89 | 44.41 |
| CDX69357 | Canola | nucleus | 42.95 | 44.41 |
| CDY13761 | Canola | nucleus | 45.25 | 44.37 |
| CDX75697 | Canola | nucleus | 42.62 | 44.07 |
| PGSC0003DMT400043251 | Potato | nucleus | 46.56 | 43.69 |
| CDX76923 | Canola | nucleus | 44.26 | 43.55 |
| CDX90376 | Canola | nucleus | 40.0 | 42.81 |
| CDX99719 | Canola | nucleus | 26.56 | 41.54 |
| Solyc11g010270.1.1 | Tomato | nucleus | 47.21 | 41.14 |
| PGSC0003DMT400041655 | Potato | nucleus | 46.89 | 41.09 |
| CDY11680 | Canola | nucleus | 20.98 | 35.96 |
| CDX67451 | Canola | nucleus | 20.33 | 34.83 |
| CDY28803 | Canola | nucleus | 16.39 | 32.05 |
| CDY69536 | Canola | nucleus | 16.39 | 32.05 |
| CDY44091 | Canola | nucleus | 27.54 | 31.58 |
| CDY48391 | Canola | nucleus | 25.9 | 31.35 |
| CDY69290 | Canola | nucleus | 24.92 | 30.4 |
| CDY33168 | Canola | nucleus | 18.69 | 30.16 |
| CDY38759 | Canola | nucleus | 27.87 | 29.93 |
| CDY28673 | Canola | nucleus | 26.56 | 29.78 |
| CDY23547 | Canola | nucleus | 27.21 | 29.64 |
| CDY46427 | Canola | nucleus | 24.59 | 29.53 |
| CDX75029 | Canola | nucleus | 18.03 | 29.41 |
| CDY37519 | Canola | nucleus | 24.92 | 29.23 |
| CDY11659 | Canola | nucleus | 27.54 | 29.17 |
| CDY52767 | Canola | nucleus | 24.26 | 29.13 |
| CDY49056 | Canola | nucleus | 24.92 | 28.9 |
| CDY70870 | Canola | nucleus | 28.2 | 28.57 |
| CDX80887 | Canola | nucleus | 20.33 | 28.44 |
| CDY11269 | Canola | nucleus | 20.33 | 28.44 |
| CDY69034 | Canola | nucleus | 24.92 | 28.36 |
| CDY71047 | Canola | nucleus | 20.98 | 27.83 |
| CDY57869 | Canola | nucleus | 20.98 | 27.83 |
| CDY04896 | Canola | nucleus | 20.66 | 27.75 |
| CDX89136 | Canola | nucleus | 20.66 | 27.51 |
| CDX76591 | Canola | nucleus | 20.66 | 27.51 |
| CDX70284 | Canola | nucleus | 20.66 | 27.39 |
| CDY10356 | Canola | nucleus | 20.66 | 27.39 |
| CDY27308 | Canola | nucleus | 20.33 | 27.07 |
| CDX70283 | Canola | nucleus | 19.02 | 26.48 |
| CDX80037 | Canola | nucleus | 21.97 | 26.38 |
| CDY71532 | Canola | nucleus | 19.67 | 26.32 |
| CDY42007 | Canola | nucleus | 18.69 | 26.03 |
| CDY41547 | Canola | nucleus | 21.64 | 25.98 |
| CDX78614 | Canola | nucleus | 25.57 | 25.91 |
| CDY70306 | Canola | nucleus | 24.59 | 25.68 |
| CDX70596 | Canola | nucleus | 25.25 | 25.33 |
| CDX85054 | Canola | nucleus | 25.25 | 25.08 |
| CDX69546 | Canola | nucleus | 25.25 | 24.92 |
| CDY28696 | Canola | nucleus | 21.31 | 24.62 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078JPW7 | UniProt:A0A078JPW7 | EnsemblPlants:CDY69618 | ProteinID:CDY69618 |
| ProteinID:CDY69618.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00089246001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF196 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EF069E | SEG:seg |
Description
BnaCnng64490DBnaCnng64490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPW7]
Coordinates
chrLK039865:-:688..2792
Molecular Weight (calculated)
34155.0 Da
IEP (calculated)
4.642
GRAVY (calculated)
-0.615
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSRGSSDS LSGFLPICHP ATDNQLSPRP TATGFLYSGS GDYSPMFDCL EDGSLEDIAV GHASSTAATE KKRRLSVEQV KALEKNFEID NKLEPERKVK
101: LAQELGLQPR QVAIWFQNRR ARWKTKQLER DYGVLKSNFD SLKRSRDSLQ RDNDSLHAEI KQLRAKLNVD GISRSSSNAS TEENVLVKAD EMVMPSNEVL
201: ELNQRPLPPP PHIPTEAPAL ELEYEMLSIF PRAEIFREDP ADSSDSSAIL NEDYSPTAAE VAAATAVEMS TMGCFGQFVK MEEHEDLFSG EEACKLFADN
301: EQWYC
101: LAQELGLQPR QVAIWFQNRR ARWKTKQLER DYGVLKSNFD SLKRSRDSLQ RDNDSLHAEI KQLRAKLNVD GISRSSSNAS TEENVLVKAD EMVMPSNEVL
201: ELNQRPLPPP PHIPTEAPAL ELEYEMLSIF PRAEIFREDP ADSSDSSAIL NEDYSPTAAE VAAATAVEMS TMGCFGQFVK MEEHEDLFSG EEACKLFADN
301: EQWYC
001: MKRSRGSSDS LSGFLPIRHS TTDKQISPRP TTTGFLYSGA GDYSQMFDAL EDDGSLEDLG GVGHASSTAA EKKRRLGVEQ VKALEKNFEI DNKLEPERKV
101: KLAQELGLQP RQVAIWFQNR RARWKTKQLE RDYGVLKSNF DALKRNRDSL QRDNDSLLGQ IKELKAKLNV EGVKGIEENG ALKAVEANQS VMANNEVLEL
201: SHRSPSPPPH IPTDAPTSEL AFEMFSIFPR TENFRDDPAD SSDSSAVLNE EYSPNTVEAA GAVAATTVEM STMGCFSQFV KMEEHEDLFS GEEACKLFAD
301: NEQWYCSDQW NS
101: KLAQELGLQP RQVAIWFQNR RARWKTKQLE RDYGVLKSNF DALKRNRDSL QRDNDSLLGQ IKELKAKLNV EGVKGIEENG ALKAVEANQS VMANNEVLEL
201: SHRSPSPPPH IPTDAPTSEL AFEMFSIFPR TENFRDDPAD SSDSSAVLNE EYSPNTVEAA GAVAATTVEM STMGCFSQFV KMEEHEDLFS GEEACKLFAD
301: NEQWYCSDQW NS
Arabidopsis Description
ATHB-5Homeobox-leucine zipper protein ATHB-5 [Source:UniProtKB/Swiss-Prot;Acc:P46667]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.