Factsheet for VIT_07s0191g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43132	Soybean	nucleus	64.48	69.23
KRH59287	Soybean	nucleus	62.99	68.73
KRG97544	Soybean	nucleus	59.1	61.49
KRH31331	Soybean	nucleus	57.61	61.47
Solyc05g051460.2.1	Tomato	nucleus	56.42	60.38
PGSC0003DMT400043251	Potato	nucleus	58.51	60.31
CDY48942	Canola	nucleus	28.66	59.26
PGSC0003DMT400041655	Potato	nucleus	59.4	57.18
Solyc11g010270.1.1	Tomato	nucleus	59.7	57.14
VIT_18s0001g06430.t01	Wine grape	nucleus	45.07	52.61
Bra030238.1-P	Field mustard	nucleus	44.78	50.51
CDY25597	Canola	nucleus	44.78	50.17
CDY25596	Canola	nucleus	39.7	50.0
CDX89467	Canola	nucleus	44.78	50.0
AT2G22430.1	Thale cress	nucleus	45.97	49.52
CDY13761	Canola	nucleus	45.67	49.2
Bra038523.1-P	Field mustard	nucleus	45.67	49.2
CDX69357	Canola	nucleus	43.28	49.15
CDY39476	Canola	nucleus	41.19	48.94
CDY69618	Canola	nucleus	44.48	48.85
CDX75697	Canola	nucleus	42.99	48.81
Bra011808.1-P	Field mustard	nucleus	42.99	48.81
CDY33967	Canola	nucleus	44.78	48.39
Bra024377.1-P	Field mustard	nucleus	43.88	48.2
CDX76923	Canola	nucleus	44.48	48.06
Bra031866.1-P	Field mustard	nucleus	44.48	48.06
CDY67332	Canola	nucleus	43.58	47.87
CDY37819	Canola	nucleus	44.18	47.74
AT5G65310.1	Thale cress	nucleus	44.18	47.44
AT4G40060.1	Thale cress	nucleus	41.49	47.28
CDX90376	Canola	nucleus	40.0	47.02
CDX99719	Canola	nucleus	27.16	46.67
Bra010642.1-P	Field mustard	nucleus	39.7	46.5
VIT_01s0026g01950.t01	Wine grape	nucleus	28.66	33.68
VIT_14s0066g01440.t01	Wine grape	nucleus	27.16	33.33
VIT_17s0000g05630.t01	Wine grape	nucleus	31.34	33.12
VIT_10s0003g00380.t01	Wine grape	nucleus	16.72	32.75
VIT_08s0007g04200.t01	Wine grape	nucleus	21.19	32.27
VIT_14s0108g00390.t01	Wine grape	nucleus	26.87	31.8
VIT_01s0026g01550.t01	Wine grape	nucleus	29.85	31.15
VIT_19s0014g02110.t01	Wine grape	nucleus	14.33	29.81
VIT_02s0025g02590.t01	Wine grape	nucleus	17.01	29.69
VIT_15s0048g02870.t01	Wine grape	nucleus	20.9	28.81
VIT_16s0098g01170.t01	Wine grape	nucleus	18.81	28.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100853966	wikigene:100853966	MapMan:15.5.3.1	EMBL:AM486924	ProteinID:CAN62215
ProteinID:CAN62215.1	ProteinID:CCB57353	ProteinID:CCB57353.1	ncoils:Coil	UniProt:F6HRP5	EMBL:FN596027
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EMBL:KT216257	EntrezGene:LOC100853966	wikigene:LOC100853966
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF196	SMART:SM00389	SUPFAM:SSF46689	TIGR:TC57450	UniParc:UPI0001985E63
ArrayExpress:VIT_07s0191g00180	EnsemblPlantsGene:VIT_07s0191g00180	EnsemblPlants:VIT_07s0191g00180.t01	unigene:Vvi.11751	unigene:Vvi.7295	RefSeq:XP_003632476
RefSeq:XP_003632476.1	SEG:seg	:	:	:	:

Description

Homodomain-leucine zipper protein ATHB-6-like protein [Source:UniProtKB/TrEMBL;Acc:F6HRP5]

Coordinates

chr7:-:14952241..14954822

Molecular Weight (calculated)

37653.5 Da

IEP (calculated)

4.850

GRAVY (calculated)

-0.829

Length

335 amino acids

Sequence
(BLAST)

001: MKRLGSSESL GALMAICPTT DEHSPRNNHV YSREFQTMFD GLDEEGCVEE SGQIVEKKRR LSVDQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV
101: WFQNRRARWK TKQLERDYGI LKANYETLKL NYDAIQHDNE ALLKEIRELK SKLNEEKTES NLSVKEELVV SESDEKVKVM EQSETAMGAG VGGSDAKDLS
201: NDDSFKDGNG GGRVSVFPDM KDGSSDSDSS AILNEDNSPN AAISSSGVLQ NNHHHHLLMS PPSSSLRFNS SSSSSINCFH FSDSSRPTLG NTQKAYQPQF
301: VKMEEHNFFG ADESCNFFSD DQPPTLPWYC PDQWT

Best Arabidopsis Sequence Match ( AT2G22430.1 )
(BLAST)

001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N

Arabidopsis Description

ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.