Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 37.5 | 36.73 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 42.71 | 36.44 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 42.19 | 33.33 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 36.98 | 32.27 |
| Zm00001d021268_P001 | Maize | nucleus | 40.1 | 32.22 |
| EER99231 | Sorghum | nucleus | 40.1 | 31.69 |
| Zm00001d006195_P001 | Maize | nucleus | 36.98 | 29.1 |
| Os09t0528200-01 | Rice | nucleus | 36.46 | 28.11 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 31.77 | 27.6 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 34.9 | 26.91 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 34.9 | 26.91 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 34.9 | 26.8 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 31.25 | 26.67 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 31.25 | 26.55 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 34.38 | 26.51 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 33.33 | 26.34 |
| Os02t0649300-01 | Rice | nucleus | 35.42 | 26.05 |
| Zm00001d017422_P001 | Maize | nucleus | 31.77 | 25.96 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 34.38 | 24.81 |
| EES05814 | Sorghum | nucleus | 32.29 | 24.8 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 33.33 | 24.62 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 36.98 | 24.48 |
| VIT_19s0014g02110.t01 | Wine grape | nucleus | 20.31 | 24.22 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 33.33 | 24.15 |
| EES11198 | Sorghum | nucleus | 33.85 | 24.07 |
| Os04t0541700-02 | Rice | nucleus | 33.85 | 23.55 |
| Zm00001d002799_P001 | Maize | nucleus | 31.77 | 23.37 |
| Zm00001d025964_P001 | Maize | nucleus | 32.29 | 23.13 |
| VIT_18s0001g06430.t01 | Wine grape | nucleus | 32.29 | 21.6 |
| VIT_10s0003g00380.t01 | Wine grape | nucleus | 18.75 | 21.05 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 23.44 | 20.45 |
| VIT_14s0066g01440.t01 | Wine grape | nucleus | 28.65 | 20.15 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 31.25 | 18.87 |
| VIT_01s0026g01550.t01 | Wine grape | nucleus | 31.25 | 18.69 |
| VIT_17s0000g05630.t01 | Wine grape | nucleus | 30.73 | 18.61 |
| VIT_14s0108g00390.t01 | Wine grape | nucleus | 26.04 | 17.67 |
| VIT_01s0026g01950.t01 | Wine grape | nucleus | 26.04 | 17.54 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 29.69 | 17.01 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100241028 | wikigene:100241028 | MapMan:15.5.3.1 | EMBL:AM468140 | ProteinID:CAN83496 |
| ProteinID:CAN83496.1 | ProteinID:CCB58297 | ProteinID:CCB58297.1 | ncoils:Coil | UniProt:F6HU74 | EMBL:FN596251 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | EntrezGene:LOC100241028 | wikigene:LOC100241028 | InterPro:Leu_zip_homeo | PFAM:PF00046 |
| PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF122 | SMART:SM00389 |
| SUPFAM:SSF46689 | TIGR:TC58144 | UniParc:UPI00015CCA70 | ArrayExpress:VIT_02s0025g02590 | EnsemblPlantsGene:VIT_02s0025g02590 | EnsemblPlants:VIT_02s0025g02590.t01 |
| RefSeq:XP_002280048 | RefSeq:XP_002280048.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:2249111..2250024
Molecular Weight (calculated)
22421.1 Da
IEP (calculated)
5.221
GRAVY (calculated)
-0.976
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: METSENIATS IRKIRKRKFS EEQIRSLEFL FESEARPEAQ LKQKVASELG LHPRQVAIWF QNKRARSKSK QIEQDYAVLK ASYDNLALQF ESLEKENQNL
101: AIQLQRLRDG LEKPRGKEDE ESEIGYTNSE TKERYNPVLQ GRIEYFAEDT HTPKMEEQTN SSLTSSADLG IFKSSCFQDQ SNCSSQWWEL WS
101: AIQLQRLRDG LEKPRGKEDE ESEIGYTNSE TKERYNPVLQ GRIEYFAEDT HTPKMEEQTN SSLTSSADLG IFKSSCFQDQ SNCSSQWWEL WS
001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
Arabidopsis Description
ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.