Factsheet for VIT_17s0000g05630.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54501	Soybean	nucleus, plastid	65.3	63.5
KRH56963	Soybean	nucleus, plastid	66.25	63.44
KRH63409	Soybean	nucleus, plastid	52.68	62.78
KRH03417	Soybean	nucleus, plastid	64.98	62.61
VIT_01s0026g01550.t01	Wine grape	nucleus	57.1	56.39
PGSC0003DMT400065207	Potato	nucleus	50.16	48.62
Solyc03g113270.2.1	Tomato	nucleus, plastid	49.21	48.3
VIT_14s0066g01440.t01	Wine grape	nucleus	37.22	43.22
GSMUA_Achr7P09730_001	Banana	nucleus	34.7	36.67
VIT_19s0014g02110.t01	Wine grape	nucleus	17.98	35.4
VIT_01s0026g01950.t01	Wine grape	nucleus	30.6	34.04
VIT_10s0003g00380.t01	Wine grape	nucleus	18.3	33.92
VIT_18s0001g06430.t01	Wine grape	nucleus	30.28	33.45
VIT_08s0007g04200.t01	Wine grape	nucleus	22.4	32.27
VIT_14s0108g00390.t01	Wine grape	nucleus	28.08	31.45
VIT_07s0191g00180.t01	Wine grape	nucleus	33.12	31.34
VIT_02s0025g02590.t01	Wine grape	nucleus	18.61	30.73
GSMUA_Achr10P...	Banana	nucleus	33.44	30.64
VIT_16s0098g01170.t01	Wine grape	nucleus	21.14	29.78
VIT_15s0048g02870.t01	Wine grape	nucleus	22.71	29.63

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100260419	wikigene:100260419	MapMan:15.5.3.1	ProteinID:CCB43116	ProteinID:CCB43116.1
ncoils:Coil	UniProt:F6GTA7	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100260419	wikigene:LOC100260419	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF306	SMART:SM00389	SUPFAM:SSF46689
TIGR:TC61132	UniParc:UPI00019852D3	ArrayExpress:VIT_17s0000g05630	EnsemblPlantsGene:VIT_17s0000g05630	EnsemblPlants:VIT_17s0000g05630.t01	unigene:Vvi.4667
RefSeq:XP_002271692	RefSeq:XP_002271692.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:-:6134173..6136422

Molecular Weight (calculated)

35990.6 Da

IEP (calculated)

4.355

GRAVY (calculated)

-0.700

Length

317 amino acids

Sequence
(BLAST)

001: MASGRVNLAA MLQNQRVPCS SQPLDALFLS ASSPSFLGSR SMLSFEDVRA GKRPDNPFFC QFDHDENGDE DLDEYFHQPE KKRRLTADQV QFLERNFEVE
101: NKLEPERKVQ LAKDLGLQPR QVAIWFQNRR ARWKTKQLEK DFGALQASYN SLKAEYENLL KEKDELKTEV ILLTDKLLVK EKERGNLEVS NTDTLSQELP
201: QVVVADSVSE GEVSKVSLVV CKQEDLSSTK SDVFDSDSPH YADGGHSALP EPGDSSYVFE ADQSDVSQDE EDNFSKSLLP PSYIFPKLED VDYPDPPTNP
301: CSFGFPVEDH AFWSWSY

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.