Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64347 | Soybean | nucleus | 48.89 | 44.9 |
| KRH53589 | Soybean | nucleus | 48.89 | 43.82 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 46.22 | 42.8 |
| VIT_02s0025g02590.t01 | Wine grape | nucleus | 36.44 | 42.71 |
| PGSC0003DMT400047622 | Potato | nucleus | 37.33 | 39.25 |
| Solyc03g082550.2.1 | Tomato | nucleus | 36.44 | 39.23 |
| Solyc06g053220.2.1 | Tomato | nucleus | 39.11 | 39.11 |
| PGSC0003DMT400013968 | Potato | nucleus | 38.67 | 38.67 |
| EER99231 | Sorghum | nucleus | 39.11 | 36.21 |
| Zm00001d021268_P001 | Maize | nucleus | 38.22 | 35.98 |
| Zm00001d006195_P001 | Maize | nucleus | 38.22 | 35.25 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 34.22 | 35.0 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 38.67 | 34.94 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 38.22 | 34.54 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 38.22 | 34.54 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 38.22 | 34.4 |
| Zm00001d017422_P001 | Maize | nucleus | 34.22 | 32.77 |
| Os09t0528200-01 | Rice | nucleus | 35.56 | 32.13 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 31.56 | 32.13 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 34.67 | 32.1 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 32.0 | 32.0 |
| EES05814 | Sorghum | nucleus | 35.56 | 32.0 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 32.0 | 31.86 |
| Os02t0649300-01 | Rice | nucleus | 35.56 | 30.65 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 35.11 | 30.38 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 34.67 | 29.43 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 34.67 | 29.32 |
| Zm00001d002799_P001 | Maize | nucleus | 33.78 | 29.12 |
| Zm00001d025964_P001 | Maize | nucleus | 34.22 | 28.73 |
| Os04t0541700-02 | Rice | nucleus | 35.11 | 28.62 |
| EES11198 | Sorghum | nucleus | 33.33 | 27.78 |
| VIT_19s0014g02110.t01 | Wine grape | nucleus | 19.56 | 27.33 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 34.67 | 26.9 |
| VIT_10s0003g00380.t01 | Wine grape | nucleus | 19.11 | 25.15 |
| VIT_14s0066g01440.t01 | Wine grape | nucleus | 28.44 | 23.44 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 32.0 | 22.64 |
| VIT_01s0026g01550.t01 | Wine grape | nucleus | 31.11 | 21.81 |
| VIT_18s0001g06430.t01 | Wine grape | nucleus | 27.56 | 21.6 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 20.89 | 21.36 |
| VIT_17s0000g05630.t01 | Wine grape | nucleus | 29.78 | 21.14 |
| VIT_01s0026g01950.t01 | Wine grape | nucleus | 25.33 | 20.0 |
| VIT_14s0108g00390.t01 | Wine grape | nucleus | 24.89 | 19.79 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 28.0 | 18.81 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100252202 | wikigene:100252202 | MapMan:15.5.3.1 | ProteinID:CBI23065 | ProteinID:CBI23065.3 |
| ncoils:Coil | UniProt:E0CVA4 | EMBL:FN595247 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| EntrezGene:LOC100252202 | wikigene:LOC100252202 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF346 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI00015CB682 | ArrayExpress:VIT_16s0098g01170 | EnsemblPlantsGene:VIT_16s0098g01170 | EnsemblPlants:VIT_16s0098g01170.t01 | RefSeq:XP_002271523 | RefSeq:XP_002271523.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr16:+:21439669..21440985
Molecular Weight (calculated)
25218.0 Da
IEP (calculated)
4.874
GRAVY (calculated)
-0.928
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRGCSAEE AGEEGEQLTR KKSRNKKRFS DEQVQYLESI FESDSKLEAR KKEELAVELG MQPRQVAIWF QNKRARWKSK QIEHDYKALR ASYDALTSRF
101: ESLKEEKQSL LTQLQKLGDL MEKPGDGVGS GFGGNSSTDG GSDTGDDAKL SYLEGGLDHR LVKCSDDDKS RSAGYFGHQE GPELLDKCEN ADISLESTGK
201: WFGFASGGFH DQSCTISQLW DFWSS
101: ESLKEEKQSL LTQLQKLGDL MEKPGDGVGS GFGGNSSTDG GSDTGDDAKL SYLEGGLDHR LVKCSDDDKS RSAGYFGHQE GPELLDKCEN ADISLESTGK
201: WFGFASGGFH DQSCTISQLW DFWSS
001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
Arabidopsis Description
ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.