Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G387300.1 | Wheat | nucleus | 82.71 | 90.53 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 87.59 | 87.92 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 84.59 | 86.54 |
| EES11198 | Sorghum | nucleus | 71.05 | 70.0 |
| Zm00001d002799_P001 | Maize | nucleus | 68.42 | 69.73 |
| Os04t0541700-02 | Rice | nucleus | 71.05 | 68.48 |
| Zm00001d025964_P001 | Maize | nucleus | 64.29 | 63.81 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 52.63 | 44.03 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 34.59 | 36.8 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 29.7 | 35.91 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 29.32 | 34.67 |
| VIT_02s0025g02590.t01 | Wine grape | nucleus | 24.81 | 34.38 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 24.81 | 33.67 |
| Solyc03g082550.2.1 | Tomato | nucleus | 25.94 | 33.01 |
| CDY27308 | Canola | nucleus | 28.2 | 32.75 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 29.32 | 32.1 |
| CDY71532 | Canola | nucleus | 27.44 | 32.02 |
| Bra039265.1-P | Field mustard | nucleus | 27.44 | 31.88 |
| PGSC0003DMT400047622 | Potato | nucleus | 25.56 | 31.78 |
| CDY41547 | Canola | nucleus | 30.08 | 31.5 |
| CDX89136 | Canola | nucleus | 27.07 | 31.44 |
| Bra014417.1-P | Field mustard | nucleus | 26.69 | 31.14 |
| AT3G61890.1 | Thale cress | nucleus | 27.07 | 30.64 |
| AT2G46680.1 | Thale cress | nucleus | 29.7 | 30.62 |
| CDX76591 | Canola | nucleus | 26.32 | 30.57 |
| Solyc01g096320.2.1 | Tomato | nucleus | 27.44 | 30.54 |
| Bra004516.1-P | Field mustard | nucleus | 28.95 | 30.32 |
| CDX80037 | Canola | nucleus | 28.95 | 30.32 |
| KRH47840 | Soybean | nucleus | 27.07 | 30.25 |
| KRH06407 | Soybean | nucleus | 27.44 | 29.8 |
| KRH64347 | Soybean | nucleus | 27.44 | 29.8 |
| Solyc06g053220.2.1 | Tomato | nucleus | 24.81 | 29.33 |
| CDY57869 | Canola | nucleus | 25.19 | 29.13 |
| Bra007637.1-P | Field mustard | nucleus | 25.19 | 29.13 |
| KRH53589 | Soybean | nucleus | 27.44 | 29.08 |
| PGSC0003DMT400000694 | Potato | nucleus | 27.44 | 28.97 |
| PGSC0003DMT400013968 | Potato | nucleus | 24.06 | 28.44 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 30.08 | 27.59 |
| HORVU5Hr1G070260.1 | Barley | nucleus | 25.94 | 25.84 |
| HORVU5Hr1G059410.2 | Barley | nucleus | 24.81 | 20.12 |
| HORVU4Hr1G075170.1 | Barley | nucleus | 19.17 | 19.92 |
| HORVU4Hr1G078410.5 | Barley | nucleus, plastid | 21.8 | 17.63 |
| HORVU6Hr1G072810.7 | Barley | nucleus | 22.93 | 17.53 |
| HORVU4Hr1G075180.3 | Barley | nucleus, plastid | 24.81 | 16.75 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:HORVU2Hr1G092710 | EnsemblPlants:HORVU2Hr1G092710.2 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | UniProt:M0YKW4 | PFAM:PF00046 | PFAM:PF02183 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF234 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI000294EA2F | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:654963171..654965963
Molecular Weight (calculated)
29628.5 Da
IEP (calculated)
5.376
GRAVY (calculated)
-0.767
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYHHHHHQQ QQQFLMPPPA SLPAAQQQQQ QQQQMCAPMM DMEMEEQVCF VGRGGGGGGR GAERKRRFTE EQIRSLESMF HAHHAKLEPR EKAELARELG
101: LQPRQVAIWF QNKRARWRSK QLEQDFAALR ASYDALHSRV ESLKHDKLAL AAQLQELSER LRERDGGSGG GGGGATIAAA SSSSCNGGGR ELDDDKRNGD
201: VEQEPTESCV LVGTACATPA DVSVSVESEC DDHLRYDGAV FPESFCATPE LWEPWPWPPV EWNAVA
101: LQPRQVAIWF QNKRARWRSK QLEQDFAALR ASYDALHSRV ESLKHDKLAL AAQLQELSER LRERDGGSGG GGGGATIAAA SSSSCNGGGR ELDDDKRNGD
201: VEQEPTESCV LVGTACATPA DVSVSVESEC DDHLRYDGAV FPESFCATPE LWEPWPWPPV EWNAVA
001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
Arabidopsis Description
ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.