Factsheet for Bra014417.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89136	Canola	nucleus	99.12	98.69
CDY71532	Canola	nucleus	97.37	97.37
Bra007637.1-P	Field mustard	nucleus	86.4	85.65
AT3G61890.1	Thale cress	nucleus	83.33	80.85
Bra004516.1-P	Field mustard	nucleus	67.11	60.24
Bra039265.1-P	Field mustard	nucleus	57.02	56.77
VIT_15s0048g02870.t01	Wine grape	nucleus	51.32	48.15
KRH47840	Soybean	nucleus	49.56	47.48
KRH06407	Soybean	nucleus	50.88	47.35
PGSC0003DMT400000694	Potato	nucleus	51.32	46.43
Solyc01g096320.2.1	Tomato	nucleus	47.37	45.19
EER99231	Sorghum	nucleus	38.6	36.21
GSMUA_Achr1P16280_001	Banana	nucleus	34.21	35.45
Zm00001d021268_P001	Maize	nucleus	36.84	35.15
TraesCS5B01G317400.1	Wheat	nucleus	38.16	34.94
HORVU5Hr1G081090.1	Barley	nucleus	38.16	34.8
TraesCS5A01G316800.1	Wheat	nucleus	37.72	34.54
Os09t0528200-01	Rice	nucleus	37.72	34.54
TraesCS5D01G323100.2	Wheat	nucleus	37.72	34.54
Zm00001d006195_P001	Maize	nucleus	34.21	31.97
Bra028454.1-P	Field mustard	nucleus	24.12	30.9
TraesCS6A01G240400.1	Wheat	nucleus	28.95	29.86
GSMUA_Achr1P18670_001	Banana	nucleus	36.84	28.97
TraesCS2D01G387300.1	Wheat	nucleus	30.7	28.81
TraesCS6D01G222600.1	Wheat	nucleus	28.07	28.44
Zm00001d002799_P001	Maize	nucleus	32.46	28.35
TraesCS6B01G284300.1	Wheat	nucleus	28.07	28.32
Zm00001d017422_P001	Maize	nucleus	28.95	28.09
EES05814	Sorghum	nucleus	30.26	27.6
Os04t0541700-02	Rice	nucleus	33.33	27.54
TraesCS2B01G407600.1	Wheat	nucleus	31.14	27.31
EES11198	Sorghum	nucleus	32.02	27.04
Zm00001d025964_P001	Maize	nucleus	31.58	26.87
HORVU2Hr1G092710.2	Barley	nucleus	31.14	26.69
TraesCS2A01G389400.1	Wheat	nucleus	30.7	26.42
Bra005259.1-P	Field mustard	nucleus	21.49	26.2
Bra022687.1-P	Field mustard	nucleus	17.11	25.0
Os02t0649300-01	Rice	nucleus	28.51	24.9
Bra039116.1-P	Field mustard	nucleus	26.75	23.46
Bra009510.1-P	Field mustard	nucleus	23.25	23.04
Bra028820.1-P	Field mustard	nucleus	22.37	22.47
Bra040519.1-P	Field mustard	nucleus	26.75	22.26
Bra003980.1-P	Field mustard	nucleus	23.68	21.43
Bra016266.1-P	Field mustard	nucleus	26.32	20.83
Bra008717.1-P	Field mustard	nucleus	25.88	20.49
Bra039135.1-P	Field mustard	nucleus	24.12	20.22
HORVU6Hr1G061390.1	Barley	nucleus	28.07	20.13
Bra024377.1-P	Field mustard	nucleus	26.75	20.0
Bra030238.1-P	Field mustard	nucleus	25.88	19.87
Bra006285.1-P	Field mustard	nucleus	24.56	19.79
Bra023506.1-P	Field mustard	nucleus	25.0	19.72
Bra016300.1-P	Field mustard	nucleus	21.93	19.68
Bra031866.1-P	Field mustard	nucleus	26.75	19.68
Bra007881.1-P	Field mustard	nucleus	24.56	19.65
Bra038523.1-P	Field mustard	nucleus	26.75	19.61
Bra011808.1-P	Field mustard	nucleus	25.0	19.32
Bra010642.1-P	Field mustard	nucleus	23.25	18.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra014417	EnsemblPlants:Bra014417.1	EnsemblPlants:Bra014417.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4DD49	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF346
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002543834	:	:	:

Description

AT3G61890 (E=1e-102) ATHB-12, ATHB12 | ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12); transcription activator/ transcription factor

Coordinates

chrA04:+:467705..468768

Molecular Weight (calculated)

26832.2 Da

IEP (calculated)

4.745

GRAVY (calculated)

-0.980

Length

228 amino acids

Sequence
(BLAST)

001: MEEGDFFSCF SEINSGMTMN KKKMRKGTNH KRFSEEQIKS LEVIFESETR LEPRKKVQLA RELGLQPRQV AIWVQNKRAR WKSKQLEKEY DILRANYNNL
101: ASQFEIIKKE KQALVSELQR LNEEMQKTKE ERNEECCGEQ RVALSSSTWS DNGKYEPEVR LNQGIVLCND DIKTEYFGFE EESNHELINI VEQADDSGLT
201: SSDNWGNFNS ESLLDQSSSN YPWWDFWS

Best Arabidopsis Sequence Match ( AT3G61890.1 )
(BLAST)

001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS

Arabidopsis Description

ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.