Factsheet for Bra030238.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25597	Canola	nucleus	98.32	97.66
CDY25596	Canola	nucleus	87.21	97.37
CDX89467	Canola	nucleus	95.62	94.67
AT2G22430.1	Thale cress	nucleus	89.56	85.53
Bra038523.1-P	Field mustard	nucleus	88.89	84.89
Bra011808.1-P	Field mustard	nucleus	71.38	71.86
Bra010642.1-P	Field mustard	nucleus	67.34	69.93
CDX99719	Canola	nucleus	44.11	67.18
KRH59287	Soybean	nucleus	51.18	49.51
KRH31331	Soybean	nucleus	52.19	49.36
KRH43132	Soybean	nucleus	51.18	48.72
KRG97544	Soybean	nucleus	52.53	48.45
Solyc05g051460.2.1	Tomato	nucleus	47.47	45.05
Bra024377.1-P	Field mustard	nucleus	46.13	44.92
VIT_07s0191g00180.t01	Wine grape	nucleus	50.51	44.78
Bra031866.1-P	Field mustard	nucleus	46.46	44.52
PGSC0003DMT400041655	Potato	nucleus	51.85	44.25
Solyc11g010270.1.1	Tomato	nucleus	51.85	44.0
PGSC0003DMT400043251	Potato	nucleus	47.14	43.08
Bra028454.1-P	Field mustard	nucleus	24.58	41.01
Bra022687.1-P	Field mustard	nucleus	17.17	32.69
Bra039116.1-P	Field mustard	nucleus	27.27	31.15
Bra003980.1-P	Field mustard	nucleus	26.26	30.95
Bra040519.1-P	Field mustard	nucleus	28.28	30.66
Bra005259.1-P	Field mustard	nucleus	18.86	29.95
Bra039135.1-P	Field mustard	nucleus	27.27	29.78
Bra016300.1-P	Field mustard	nucleus	25.25	29.53
Bra008717.1-P	Field mustard	nucleus	27.95	28.82
Bra007881.1-P	Field mustard	nucleus	27.61	28.77
Bra006285.1-P	Field mustard	nucleus	27.27	28.62
Bra016266.1-P	Field mustard	nucleus	27.61	28.47
Bra023506.1-P	Field mustard	nucleus	27.27	28.03
Bra007637.1-P	Field mustard	nucleus	21.21	27.39
Bra039265.1-P	Field mustard	nucleus	20.88	27.07
Bra004516.1-P	Field mustard	nucleus	22.56	26.38
Bra014417.1-P	Field mustard	nucleus	19.87	25.88
Bra028820.1-P	Field mustard	nucleus	19.53	25.55
Bra009510.1-P	Field mustard	nucleus	19.53	25.22

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra030238	EnsemblPlants:Bra030238.1	EnsemblPlants:Bra030238.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4EN68	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF524
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002544202	SEG:seg	:	:

Description

AT2G22430 (E=3e-102) ATHB6 | ATHB6; DNA binding / protein binding / sequence-specific DNA binding / transcription activator/ transcription factor

Coordinates

chrA04:-:9738495..9739576

Molecular Weight (calculated)

33831.8 Da

IEP (calculated)

4.412

GRAVY (calculated)

-0.923

Length

297 amino acids

Sequence
(BLAST)

001: MMKRLRSSDS VGGLISLCHT SSTDEQSPRR YGSMLEGYDE EEEEEAIAEE RGQTEKKRRL SINQVKALEK NFELENKLEP ERKVKLAQEL GLQPRQVAVW
101: FQNRRARWKT KQLEKDYGVL KTQYDSLRHN FDSLRRDNES LLQEISKLKS KLNGEEEEEE NNAVKMESDF SVKEEEDSLP ENITEPPSSP PELLEHSDSF
201: NYRSFTDLRD LLPLKASFAA AAGSSDSSDS SAVMNEESSS NVTVAPTAVP GGGFFQFVKM EQTEDHDDFL SGEEACGFFS DEQPPSLHWY SAVDHWT

Best Arabidopsis Sequence Match ( AT2G22430.1 )
(BLAST)

001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N

Arabidopsis Description

ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.