Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043251 | Potato | nucleus | 93.29 | 89.85 |
| Solyc11g010270.1.1 | Tomato | nucleus | 68.37 | 61.14 |
| CDY48942 | Canola | nucleus | 30.35 | 58.64 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 60.38 | 56.42 |
| KRH43132 | Soybean | nucleus | 56.23 | 56.41 |
| KRH59287 | Soybean | nucleus | 53.99 | 55.05 |
| KRH31331 | Soybean | nucleus | 52.08 | 51.91 |
| KRG97544 | Soybean | nucleus | 53.04 | 51.55 |
| CDY39476 | Canola | nucleus | 43.13 | 47.87 |
| CDX89467 | Canola | nucleus | 45.69 | 47.67 |
| AT2G22430.1 | Thale cress | nucleus | 47.28 | 47.59 |
| CDY25597 | Canola | nucleus | 45.37 | 47.49 |
| Bra030238.1-P | Field mustard | nucleus | 45.05 | 47.47 |
| CDY25596 | Canola | nucleus | 40.26 | 47.37 |
| CDX75697 | Canola | nucleus | 44.41 | 47.12 |
| Bra011808.1-P | Field mustard | nucleus | 44.41 | 47.12 |
| CDX69357 | Canola | nucleus | 44.09 | 46.78 |
| AT4G40060.1 | Thale cress | nucleus | 43.77 | 46.6 |
| AT5G65310.1 | Thale cress | nucleus | 46.33 | 46.47 |
| CDX90376 | Canola | nucleus | 42.17 | 46.32 |
| CDY69618 | Canola | nucleus | 44.73 | 45.9 |
| Bra010642.1-P | Field mustard | nucleus | 41.85 | 45.8 |
| CDY13761 | Canola | nucleus | 45.37 | 45.66 |
| Bra038523.1-P | Field mustard | nucleus | 45.37 | 45.66 |
| CDY67332 | Canola | nucleus | 44.41 | 45.57 |
| Bra024377.1-P | Field mustard | nucleus | 44.41 | 45.57 |
| CDY33967 | Canola | nucleus | 45.05 | 45.48 |
| CDX76923 | Canola | nucleus | 45.05 | 45.48 |
| Bra031866.1-P | Field mustard | nucleus | 44.41 | 44.84 |
| CDY37819 | Canola | nucleus | 44.09 | 44.52 |
| CDX99719 | Canola | nucleus | 27.16 | 43.59 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 22.04 | 35.2 |
| Solyc04g005800.2.1 | Tomato | nucleus | 30.67 | 32.32 |
| Solyc05g006980.2.1 | Tomato | nucleus | 29.71 | 32.29 |
| Solyc04g074700.2.1 | Tomato | nucleus | 31.31 | 31.61 |
| Solyc02g086930.2.1 | Tomato | nucleus | 28.75 | 31.58 |
| Solyc01g010600.2.1 | Tomato | nucleus | 24.28 | 31.28 |
| Solyc02g077590.1.1 | Tomato | nucleus | 16.93 | 29.61 |
| Solyc06g053220.2.1 | Tomato | nucleus | 20.77 | 28.89 |
| Solyc09g008810.2.1 | Tomato | nucleus | 22.04 | 28.63 |
| Solyc05g007180.2.1 | Tomato | nucleus | 27.16 | 27.87 |
| Solyc07g062790.1.1 | Tomato | nucleus | 15.34 | 27.59 |
| Solyc03g113270.2.1 | Tomato | nucleus, plastid | 28.43 | 27.55 |
| Solyc02g067410.1.1 | Tomato | nucleus | 23.0 | 27.38 |
| Solyc03g082550.2.1 | Tomato | nucleus | 18.21 | 27.27 |
| Solyc01g096320.2.1 | Tomato | nucleus | 20.77 | 27.2 |
| Solyc02g087840.2.1 | Tomato | nucleus | 24.92 | 25.24 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| UniProt:K4C1H7 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF196 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc05g051460.2 |
| EnsemblPlants:Solyc05g051460.2.1 | UniParc:UPI00027656EC | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:61811979..61814188
Molecular Weight (calculated)
35642.7 Da
IEP (calculated)
4.447
GRAVY (calculated)
-0.873
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRVRSNDSL GAPLISMCQN TADEENNWNN HAYSRDFQIQ SMLESLDDDE ATTYVEESGV GSEKKRRLRV DQVKALEKNF EVDNKLEPER KVKLAQELGL
101: QPRQVAIWFQ NRRARWKTKQ LERDYNVLKA NFDSLKHNYE SIQHDNEALL KEINELKSKL HGGNSEIKIA VKEEAFDSES DDKRTEQSNQ CNNSNTELNF
201: DTIIMNPSIN FTDFKDGSSD SDSSAILNED NAVISSGAFL IKSGSGSGSS SPDSNSSLNC FQFLESNEVN FSSSQFVKLE EHNFFNGEES CSTLLFTDEQ
301: APTLHWYCPD DWN
101: QPRQVAIWFQ NRRARWKTKQ LERDYNVLKA NFDSLKHNYE SIQHDNEALL KEINELKSKL HGGNSEIKIA VKEEAFDSES DDKRTEQSNQ CNNSNTELNF
201: DTIIMNPSIN FTDFKDGSSD SDSSAILNED NAVISSGAFL IKSGSGSGSS SPDSNSSLNC FQFLESNEVN FSSSQFVKLE EHNFFNGEES CSTLLFTDEQ
301: APTLHWYCPD DWN
001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
Arabidopsis Description
ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.