Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001322 | Potato | nucleus | 95.79 | 95.79 |
| VIT_14s0066g01440.t01 | Wine grape | nucleus | 68.07 | 71.06 |
| KRH20316 | Soybean | nucleus | 63.16 | 63.16 |
| KRG93337 | Soybean | nucleus | 58.95 | 62.92 |
| AT3G01470.1 | Thale cress | nucleus | 56.49 | 59.19 |
| Bra039116.1-P | Field mustard | nucleus | 53.68 | 58.85 |
| CDY37519 | Canola | nucleus | 53.68 | 58.85 |
| CDY49056 | Canola | nucleus | 52.98 | 57.41 |
| CDY28673 | Canola | nucleus | 51.58 | 54.04 |
| Bra040519.1-P | Field mustard | nucleus | 51.23 | 53.28 |
| GSMUA_Achr9P14570_001 | Banana | nucleus | 45.61 | 49.43 |
| GSMUA_Achr5P05300_001 | Banana | nucleus | 35.44 | 49.03 |
| GSMUA_Achr3P06190_001 | Banana | nucleus | 47.02 | 47.35 |
| GSMUA_Achr9P18360_001 | Banana | nucleus | 44.21 | 44.52 |
| Zm00001d017920_P001 | Maize | nucleus | 50.53 | 43.64 |
| GSMUA_Achr8P25940_001 | Banana | nucleus | 43.86 | 43.55 |
| KXG30829 | Sorghum | nucleus | 51.23 | 42.82 |
| Os02t0729700-01 | Rice | nucleus | 50.53 | 41.98 |
| Zm00001d051749_P001 | Maize | nucleus | 49.82 | 41.89 |
| Zm00001d050310_P001 | Maize | nucleus | 38.6 | 40.44 |
| Zm00001d032316_P001 | Maize | nucleus | 37.89 | 40.0 |
| KXG25140 | Sorghum | nucleus | 38.25 | 39.64 |
| TraesCS6A01G290800.1 | Wheat | nucleus | 46.67 | 39.12 |
| TraesCS6B01G321100.1 | Wheat | nucleus | 47.02 | 39.07 |
| HORVU6Hr1G072810.7 | Barley | nucleus | 44.21 | 36.21 |
| Solyc05g006980.2.1 | Tomato | nucleus | 36.49 | 36.11 |
| TraesCS6D01G272000.1 | Wheat | nucleus | 46.67 | 35.56 |
| Solyc04g005800.2.1 | Tomato | nucleus | 35.79 | 34.34 |
| Os08t0416000-01 | Rice | nucleus | 41.05 | 33.52 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 22.81 | 33.16 |
| Os09t0379600-00 | Rice | nucleus | 23.86 | 32.38 |
| Solyc03g113270.2.1 | Tomato | nucleus, plastid | 35.79 | 31.58 |
| Solyc02g067410.1.1 | Tomato | nucleus | 28.77 | 31.18 |
| Solyc01g010600.2.1 | Tomato | nucleus | 26.32 | 30.86 |
| TraesCS5D01G205000.1 | Wheat | nucleus | 32.28 | 30.77 |
| TraesCS5B01G197700.1 | Wheat | nucleus | 32.28 | 30.77 |
| TraesCS5A01G199300.1 | Wheat | nucleus | 32.28 | 30.67 |
| Solyc01g096320.2.1 | Tomato | nucleus | 25.26 | 30.13 |
| Solyc05g007180.2.1 | Tomato | nucleus | 31.23 | 29.18 |
| Solyc05g051460.2.1 | Tomato | nucleus | 31.58 | 28.75 |
| Solyc02g077590.1.1 | Tomato | nucleus | 17.54 | 27.93 |
| Zm00001d005692_P001 | Maize | nucleus | 27.37 | 27.56 |
| Solyc11g010270.1.1 | Tomato | nucleus | 33.68 | 27.43 |
| Solyc09g008810.2.1 | Tomato | nucleus | 23.16 | 27.39 |
| Solyc03g082550.2.1 | Tomato | nucleus | 20.0 | 27.27 |
| Solyc02g087840.2.1 | Tomato | nucleus | 29.12 | 26.86 |
| EER98832 | Sorghum | nucleus | 29.47 | 26.5 |
| HORVU5Hr1G059410.2 | Barley | nucleus | 30.18 | 26.22 |
| Solyc07g062790.1.1 | Tomato | nucleus | 15.79 | 25.86 |
| Solyc06g053220.2.1 | Tomato | nucleus | 20.0 | 25.33 |
| Solyc04g074700.2.1 | Tomato | nucleus | 26.67 | 24.52 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EMBL:AM902288 | UniProt:B6GVA3 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006412 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009637 | GO:GO:0009651 | GO:GO:0009653 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0017148 |
| GO:GO:0019538 | GO:GO:0042803 | GO:GO:0043565 | GO:GO:0045893 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF136 | SMART:SM00389 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc02g086930.2 | EnsemblPlants:Solyc02g086930.2.1 | UniParc:UPI000183491A | SEG:seg | : |
Description
Homeodomain leucine zipper protein [Source:UniProtKB/TrEMBL;Acc:B6GVA3]
Coordinates
chr2:+:49520110..49523611
Molecular Weight (calculated)
32231.2 Da
IEP (calculated)
4.698
GRAVY (calculated)
-0.914
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGHIFFDP SSCHGNMLFL GSGDPVFRGP RSTMMKMEDS SKRRPFFSSP EDLYDEEYYD EQSPEKKRRL TPEQVHLLEK SFETENKLEP ERKTQLAKKL
101: GLQPRQVAVW FQNRRARWKT KQLERDYDQL KSSYDSLLSD FDSVRKDNDK LKSEVVSLME KLQGKVVGGA GGNEKSDILE VDAMTILQVK VKAEDRLSSG
201: SGGSAVVDEH SPQLVDSGDS YFHTDHEEYP GPGGCNVPPP MDGLQSEEDD GSDDHGSCHG YFSNVFVAEE QHHEQGEEPI GWFWS
101: GLQPRQVAVW FQNRRARWKT KQLERDYDQL KSSYDSLLSD FDSVRKDNDK LKSEVVSLME KLQGKVVGGA GGNEKSDILE VDAMTILQVK VKAEDRLSSG
201: SGGSAVVDEH SPQLVDSGDS YFHTDHEEYP GPGGCNVPPP MDGLQSEEDD GSDDHGSCHG YFSNVFVAEE QHHEQGEEPI GWFWS
001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
Arabidopsis Description
HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.