Factsheet for Solyc04g005800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007376	Potato	nucleus	90.24	90.54
Solyc05g006980.2.1	Tomato	nucleus	58.92	60.76
VIT_01s0026g01550.t01	Wine grape	nucleus	50.17	46.42
KRH45836	Soybean	nucleus	48.15	44.69
KRH74760	Soybean	nucleus	51.52	44.35
KRH69374	Soybean	nucleus	50.51	43.48
KRG99178	Soybean	nucleus	46.46	42.59
Solyc03g113270.2.1	Tomato	nucleus, plastid	44.11	40.56
Solyc02g086930.2.1	Tomato	nucleus	34.34	35.79
Solyc08g083130.2.1	Tomato	extracellular, nucleus	22.56	34.18
Solyc01g010600.2.1	Tomato	nucleus	26.6	32.51
Solyc02g067410.1.1	Tomato	nucleus	27.95	31.56
Solyc05g007180.2.1	Tomato	nucleus	31.99	31.15
Solyc05g051460.2.1	Tomato	nucleus	32.32	30.67
Solyc02g077590.1.1	Tomato	nucleus	17.85	29.61
Solyc01g096320.2.1	Tomato	nucleus	22.9	28.45
Solyc02g087840.2.1	Tomato	nucleus	28.96	27.83
Solyc03g082550.2.1	Tomato	nucleus	19.19	27.27
Solyc11g010270.1.1	Tomato	nucleus	31.31	26.57
Solyc09g008810.2.1	Tomato	nucleus	21.55	26.56
Solyc07g062790.1.1	Tomato	nucleus	15.49	26.44
Solyc06g053220.2.1	Tomato	nucleus	19.87	26.22
Solyc04g074700.2.1	Tomato	nucleus	25.25	24.19

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4BNI6
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF306	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g005800.2	EnsemblPlants:Solyc04g005800.2.1
UniParc:UPI00027665E1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:514768..516954

Molecular Weight (calculated)

34498.0 Da

IEP (calculated)

5.587

GRAVY (calculated)

-0.911

Length

297 amino acids

Sequence
(BLAST)

001: MEVARVHEGS NNGFILPNEI LPPTSNWISN SSSIFHGSVS MVNFDQDRVQ KSKKRSFLAQ LDQDDSSSND DNYNYHHQSE KKRRLLPKQV EYLEKSFEVE
101: NKLEPERKVQ LAKETGLQPR QVAIWFQNRR ARCKTKQIEK DYDVLKASFD ELKTQYDCLF KENGSLRNEV HLLKEKLINR VKGKEILEFI SPLDHVEPQN
201: PSIGVDSNLA MVKCKQEDAK SDVLDSDSPR FTDGDYTSYL EPADSSNVFQ TEHSNFSREN DTLCFPKLEE HHHHDDLPVN SCNLGFQIED QSWFSHY

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.