Factsheet for Solyc05g006980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045471	Potato	nucleus	94.79	90.7
Solyc04g005800.2.1	Tomato	nucleus	60.76	58.92
VIT_01s0026g01550.t01	Wine grape	nucleus	52.78	47.35
KRH74760	Soybean	nucleus	53.47	44.64
KRH45836	Soybean	nucleus	48.26	43.44
KRH69374	Soybean	nucleus	51.74	43.19
Solyc03g113270.2.1	Tomato	nucleus, plastid	47.22	42.11
KRG99178	Soybean	nucleus	46.88	41.67
Solyc02g086930.2.1	Tomato	nucleus	36.11	36.49
Solyc02g067410.1.1	Tomato	nucleus	29.86	32.7
Solyc08g083130.2.1	Tomato	extracellular, nucleus	22.22	32.65
Solyc01g010600.2.1	Tomato	nucleus	26.04	30.86
Solyc02g077590.1.1	Tomato	nucleus	19.1	30.73
Solyc05g007180.2.1	Tomato	nucleus	32.29	30.49
Solyc05g051460.2.1	Tomato	nucleus	32.29	29.71
Solyc02g087840.2.1	Tomato	nucleus	30.56	28.48
Solyc09g008810.2.1	Tomato	nucleus	23.26	27.8
Solyc07g062790.1.1	Tomato	nucleus	16.67	27.59
Solyc11g010270.1.1	Tomato	nucleus	31.6	26.0
Solyc03g082550.2.1	Tomato	nucleus	18.75	25.84
Solyc04g074700.2.1	Tomato	nucleus	27.08	25.16
Solyc01g096320.2.1	Tomato	nucleus	20.83	25.1
Solyc06g053220.2.1	Tomato	nucleus	19.1	24.44

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:K4BWM4	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF306	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc05g006980.2
EnsemblPlants:Solyc05g006980.2.1	UniParc:UPI00027658A2	:	:	:	:

Description

No Description!

Coordinates

chr5:-:1561232..1563997

Molecular Weight (calculated)

33418.6 Da

IEP (calculated)

4.692

GRAVY (calculated)

-0.920

Length

288 amino acids

Sequence
(BLAST)

001: MEVGRVINEK LSHCLWMSNS SPSFHGSVSM VNFEDVGRGE VSKERSFFPG IDKEETSNDD YDSCYHQPEK KRRLLPNQVQ FLEKSFEVDN KLEPERKVQL
101: ANELGLQPRQ IAIWFQNRRA RYKTKVLEKD YDALKASFDK LKADYDTLFK ENEDLRNEVH LLTQKLHIRE KGKENSEQSE PISPIDTQEA QKATTPIVVT
201: SNVPKLMCKQ EDATSAKSDV IDSDSPHYTD GNHSSNVFEQ EPSDFSRDED DNLSKNFLYF PEIGDQIQAN SCNLSFQIED QPCWFWQY

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.