Factsheet for Solyc04g074700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079230	Potato	nucleus	89.35	94.86
VIT_18s0001g06430.t01	Wine grape	nucleus	30.65	33.1
Solyc09g008810.2.1	Tomato	nucleus	25.16	32.37
Solyc05g051460.2.1	Tomato	nucleus	31.61	31.31
Solyc08g083130.2.1	Tomato	extracellular, nucleus	19.03	30.1
Solyc02g077590.1.1	Tomato	nucleus	16.45	28.49
Solyc11g010270.1.1	Tomato	nucleus	31.94	28.29
Solyc07g062790.1.1	Tomato	nucleus	15.48	27.59
Solyc05g006980.2.1	Tomato	nucleus	25.16	27.08
Solyc02g086930.2.1	Tomato	nucleus	24.52	26.67
Solyc01g096320.2.1	Tomato	nucleus	20.0	25.94
Solyc03g113270.2.1	Tomato	nucleus, plastid	26.77	25.7
Solyc02g067410.1.1	Tomato	nucleus	21.61	25.48
Solyc04g005800.2.1	Tomato	nucleus	24.19	25.25
Solyc06g053220.2.1	Tomato	nucleus	17.74	24.44
Solyc01g010600.2.1	Tomato	nucleus	19.03	24.28
Solyc05g007180.2.1	Tomato	nucleus	23.55	23.93
Solyc03g082550.2.1	Tomato	nucleus	16.13	23.92
Solyc02g087840.2.1	Tomato	nucleus	22.26	22.33

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:K4BU08	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF196	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g074700.2
EnsemblPlants:Solyc04g074700.2.1	UniParc:UPI0002765852	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:60616255..60619389

Molecular Weight (calculated)

35256.7 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.958

Length

310 amino acids

Sequence
(BLAST)

001: MKRFSFSDSS GKLLYPTEEK NTENLGYSNE FQAMLDGLED EDGIEESGCG TGKKRRLRVD QVQALEKIFE VDNKLDPDRK VKIAQELGLQ PRQIAIWFQN
101: RRARWKTKQL ERDYNILKSN YEALQHNYTK VEQEKEGLIT ELKGLKEKLG EETLLSPVFQ RPQEILNKLK NSSDFVDSKD GSSDSDSSGV MNEETYNIST
201: LNYQQLMPKV SSYSNSLDHL SLSSSTYTQL MDPRASNSTS SSMRAYNNNN NNNDNNNSNN QQQQQAVGRI EEQNGFTTED SCNIYSVDQA PNLYWVGAWL
301: LGAYQTPCGG

Best Arabidopsis Sequence Match ( AT2G22430.1 )
(BLAST)

001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N

Arabidopsis Description

ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.