Factsheet for Solyc01g096320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000694	Potato	nucleus	92.47	87.7
KRH47840	Soybean	nucleus	55.65	55.88
KRH06407	Soybean	nucleus	56.07	54.69
VIT_15s0048g02870.t01	Wine grape	nucleus	54.39	53.5
CDX76591	Canola	nucleus	46.44	48.47
AT3G61890.1	Thale cress	nucleus	47.28	48.09
CDX89136	Canola	nucleus	45.61	47.6
CDY71532	Canola	nucleus	45.19	47.37
Bra014417.1-P	Field mustard	nucleus	45.19	47.37
CDY57869	Canola	nucleus	44.77	46.52
Bra007637.1-P	Field mustard	nucleus	44.77	46.52
AT2G46680.1	Thale cress	nucleus	49.37	45.74
CDY41547	Canola	nucleus	48.54	45.67
CDX80037	Canola	nucleus	48.12	45.28
Bra004516.1-P	Field mustard	nucleus	48.12	45.28
Bra039265.1-P	Field mustard	nucleus	41.42	43.23
Solyc08g083130.2.1	Tomato	extracellular, nucleus	35.15	42.86
CDY27308	Canola	nucleus	41.0	42.79
Solyc03g082550.2.1	Tomato	nucleus	37.24	42.58
Solyc06g053220.2.1	Tomato	nucleus	37.66	40.0
GSMUA_Achr1P16280_001	Banana	nucleus	35.56	38.64
Zm00001d021268_P001	Maize	nucleus	36.4	36.4
EER99231	Sorghum	nucleus	36.4	35.8
TraesCS5D01G323100.2	Wheat	nucleus	37.24	35.74
TraesCS5A01G316800.1	Wheat	nucleus	36.82	35.34
TraesCS5B01G317400.1	Wheat	nucleus	36.82	35.34
HORVU5Hr1G081090.1	Barley	nucleus	36.82	35.2
Os09t0528200-01	Rice	nucleus	36.4	34.94
Zm00001d006195_P001	Maize	nucleus	33.89	33.2
TraesCS6A01G240400.1	Wheat	nucleus	28.87	31.22
GSMUA_Achr1P18670_001	Banana	nucleus	37.66	31.03
TraesCS6D01G222600.1	Wheat	nucleus	28.03	29.78
TraesCS2D01G387300.1	Wheat	nucleus	30.13	29.63
TraesCS6B01G284300.1	Wheat	nucleus	27.62	29.2
TraesCS2B01G407600.1	Wheat	nucleus	30.54	28.08
Os04t0541700-02	Rice	nucleus	32.22	27.9
Zm00001d017422_P001	Maize	nucleus	27.2	27.66
HORVU2Hr1G092710.2	Barley	nucleus	30.54	27.44
TraesCS2A01G389400.1	Wheat	nucleus	29.71	26.79
Zm00001d002799_P001	Maize	nucleus	28.87	26.44
EES05814	Sorghum	nucleus	27.62	26.4
Zm00001d025964_P001	Maize	nucleus	29.29	26.12
Os02t0649300-01	Rice	nucleus	28.45	26.05
Solyc07g062790.1.1	Tomato	nucleus	18.83	25.86
EES11198	Sorghum	nucleus	28.87	25.56
Solyc02g086930.2.1	Tomato	nucleus	30.13	25.26
Solyc01g010600.2.1	Tomato	nucleus	25.1	24.69
Solyc02g077590.1.1	Tomato	nucleus	17.99	24.02
Solyc04g005800.2.1	Tomato	nucleus	28.45	22.9
Solyc09g008810.2.1	Tomato	nucleus	22.59	22.41
Solyc02g067410.1.1	Tomato	nucleus	24.27	22.05
Solyc03g113270.2.1	Tomato	nucleus, plastid	29.29	21.67
Solyc05g007180.2.1	Tomato	nucleus	26.78	20.98
Solyc05g006980.2.1	Tomato	nucleus	25.1	20.83
Solyc05g051460.2.1	Tomato	nucleus	27.2	20.77
Solyc11g010270.1.1	Tomato	nucleus	30.13	20.57
HORVU6Hr1G061390.1	Barley	nucleus	27.2	20.44
Solyc02g087840.2.1	Tomato	nucleus	25.94	20.06
Solyc04g074700.2.1	Tomato	nucleus	25.94	20.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:K4B020	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF122	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g096320.2
EnsemblPlants:Solyc01g096320.2.1	UniParc:UPI00027678A0	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:87390483..87391762

Molecular Weight (calculated)

27268.6 Da

IEP (calculated)

4.926

GRAVY (calculated)

-0.794

Length

239 amino acids

Sequence
(BLAST)

001: MFDTGEFSPS SSTAAVSAEC FSSSSCFSSL SSSKKKKIHS SNNARRFSDE QIKSLETMFE TETKLEPRKK LQLARELGLQ PRQVAIWFQN KRARWKSKQL
101: ERDYSILKSN YDNLASQYEA LKKEKQSLLI QLQKLKEIES DNRCSVIKKN EMEGMPSLSF DLSSQHGTNG VMSDDDIDSS IRADYLGLDD DAEYHLLKIV
201: ETGDSSLTSP ENWGCLDDDG ILNHQPNSSS YDQWWDFWS

Best Arabidopsis Sequence Match ( AT2G46680.1 )
(BLAST)

001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS

Arabidopsis Description

ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.