Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007637.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX76591 | Canola | nucleus | 95.65 | 96.07 |
| CDX89136 | Canola | nucleus | 85.65 | 86.03 |
| CDY71532 | Canola | nucleus | 84.78 | 85.53 |
| AT3G61890.1 | Thale cress | nucleus | 83.91 | 82.13 |
| CDY41547 | Canola | nucleus | 66.52 | 60.24 |
| CDX80037 | Canola | nucleus | 66.52 | 60.24 |
| CDY27308 | Canola | nucleus | 57.83 | 58.08 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 49.57 | 46.91 |
| PGSC0003DMT400000694 | Potato | nucleus | 50.0 | 45.63 |
| KRH47840 | Soybean | nucleus | 46.96 | 45.38 |
| KRH06407 | Soybean | nucleus | 47.83 | 44.9 |
| Solyc01g096320.2.1 | Tomato | nucleus | 46.52 | 44.77 |
| EER99231 | Sorghum | nucleus | 36.52 | 34.57 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 33.04 | 34.55 |
| Zm00001d021268_P001 | Maize | nucleus | 35.22 | 33.89 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 36.52 | 33.73 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 36.52 | 33.6 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 36.09 | 33.33 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 36.09 | 33.33 |
| Os09t0528200-01 | Rice | nucleus | 34.35 | 31.73 |
| CDY48942 | Canola | nucleus | 22.17 | 31.48 |
| Zm00001d006195_P001 | Maize | nucleus | 32.17 | 30.33 |
| CDY11680 | Canola | nucleus | 23.04 | 29.78 |
| CDX67451 | Canola | nucleus | 23.04 | 29.78 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 36.52 | 28.97 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 26.52 | 27.6 |
| CDX99719 | Canola | nucleus | 23.04 | 27.18 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 28.7 | 27.16 |
| CDY28803 | Canola | nucleus | 18.26 | 26.92 |
| CDY69536 | Canola | nucleus | 18.26 | 26.92 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 26.09 | 26.67 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 26.09 | 26.55 |
| EES05814 | Sorghum | nucleus | 28.7 | 26.4 |
| Zm00001d017422_P001 | Maize | nucleus | 26.96 | 26.38 |
| Os04t0541700-02 | Rice | nucleus | 31.3 | 26.09 |
| Zm00001d002799_P001 | Maize | nucleus | 29.57 | 26.05 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 29.13 | 25.77 |
| EES11198 | Sorghum | nucleus | 30.0 | 25.56 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 29.13 | 25.19 |
| CDX75029 | Canola | nucleus | 20.43 | 25.13 |
| Zm00001d025964_P001 | Maize | nucleus | 29.13 | 25.0 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 28.7 | 24.91 |
| CDY33168 | Canola | nucleus | 20.43 | 24.87 |
| CDY37519 | Canola | nucleus | 26.96 | 23.85 |
| Os02t0649300-01 | Rice | nucleus | 26.52 | 23.37 |
| CDY49056 | Canola | nucleus | 26.52 | 23.19 |
| CDX80887 | Canola | nucleus | 21.74 | 22.94 |
| CDY11269 | Canola | nucleus | 21.74 | 22.94 |
| CDY25596 | Canola | nucleus | 26.52 | 22.93 |
| CDY28673 | Canola | nucleus | 26.96 | 22.79 |
| CDX70284 | Canola | nucleus | 22.61 | 22.61 |
| CDY10356 | Canola | nucleus | 22.61 | 22.61 |
| CDY71047 | Canola | nucleus | 22.17 | 22.17 |
| CDY04896 | Canola | nucleus | 21.74 | 22.03 |
| CDY69290 | Canola | nucleus | 23.48 | 21.6 |
| CDY42007 | Canola | nucleus | 20.43 | 21.46 |
| CDX70283 | Canola | nucleus | 20.43 | 21.46 |
| CDY25597 | Canola | nucleus | 27.39 | 21.07 |
| CDY48391 | Canola | nucleus | 23.04 | 21.03 |
| CDX69357 | Canola | nucleus | 26.96 | 21.02 |
| CDX89467 | Canola | nucleus | 27.39 | 21.0 |
| CDY69618 | Canola | nucleus | 27.83 | 20.98 |
| CDY13761 | Canola | nucleus | 28.26 | 20.9 |
| CDX75697 | Canola | nucleus | 26.52 | 20.68 |
| CDY67332 | Canola | nucleus | 27.39 | 20.66 |
| CDY23547 | Canola | nucleus | 24.78 | 20.36 |
| CDY33967 | Canola | nucleus | 27.39 | 20.32 |
| CDY37819 | Canola | nucleus | 27.39 | 20.32 |
| CDX76923 | Canola | nucleus | 27.39 | 20.32 |
| CDY39476 | Canola | nucleus | 24.78 | 20.21 |
| CDY69034 | Canola | nucleus | 23.48 | 20.15 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 27.83 | 20.13 |
| CDY38759 | Canola | nucleus | 24.78 | 20.07 |
| CDX90376 | Canola | nucleus | 24.78 | 20.0 |
| CDY44091 | Canola | nucleus | 23.04 | 19.92 |
| CDY11659 | Canola | nucleus | 24.78 | 19.79 |
| CDY28696 | Canola | nucleus | 22.17 | 19.32 |
| CDY52767 | Canola | nucleus | 21.3 | 19.29 |
| CDY46427 | Canola | nucleus | 21.3 | 19.29 |
| CDX85054 | Canola | nucleus | 25.65 | 19.22 |
| CDX69546 | Canola | nucleus | 25.65 | 19.09 |
| CDX78614 | Canola | nucleus | 24.78 | 18.94 |
| CDY70306 | Canola | nucleus | 23.91 | 18.84 |
| CDX70596 | Canola | nucleus | 24.35 | 18.42 |
| CDY70870 | Canola | nucleus | 23.91 | 18.27 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078J590 | UniProt:A0A078J590 | EnsemblPlants:CDY57869 | ProteinID:CDY57869 |
| ProteinID:CDY57869.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00022771001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF346 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002542A43 | SEG:seg |
Description
BnaA09g55520DBnaA09g55520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J590]
Coordinates
chrLK033612:+:2761..4016
Molecular Weight (calculated)
26947.5 Da
IEP (calculated)
5.518
GRAVY (calculated)
-0.984
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGDVFNCC FSEINSGMSM NKNKKKMKKS NNQKRFSEEQ IKSLEVIFES ETRLEPRKKV QVAQELGLQP RQVAIWFQNK RARWKTKQLE KEYNILRANY
101: NHLASQFDIM KKEKQALVSE LQRLNEEMHK SKEERREECC GEQRVALSST TRSENGKCEP EVRINQGIAL CNDDIKTEYF GFEESNHELM NIVEQAGDSC
201: LTSSDNWGGF NSDSILDQSS SNYPWWDFWS
101: NHLASQFDIM KKEKQALVSE LQRLNEEMHK SKEERREECC GEQRVALSST TRSENGKCEP EVRINQGIAL CNDDIKTEYF GFEESNHELM NIVEQAGDSC
201: LTSSDNWGGF NSDSILDQSS SNYPWWDFWS
001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
Arabidopsis Description
ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.