Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75029 | Canola | nucleus | 93.12 | 94.12 |
| Bra005259.1-P | Field mustard | nucleus | 91.01 | 91.98 |
| AT2G36610.1 | Thale cress | nucleus | 65.08 | 66.49 |
| KRH20007 | Soybean | nucleus | 45.5 | 38.91 |
| KRH32628 | Soybean | nucleus | 44.44 | 37.33 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 41.8 | 35.91 |
| CDY11269 | Canola | nucleus | 40.21 | 34.86 |
| CDX80887 | Canola | nucleus | 39.68 | 34.4 |
| CDX70284 | Canola | nucleus | 40.74 | 33.48 |
| CDY10356 | Canola | nucleus | 40.74 | 33.48 |
| CDY71047 | Canola | nucleus | 40.74 | 33.48 |
| CDY04896 | Canola | nucleus | 39.68 | 33.04 |
| Solyc09g008810.2.1 | Tomato | nucleus | 41.27 | 32.37 |
| CDY48942 | Canola | nucleus | 27.51 | 32.1 |
| PGSC0003DMT400006949 | Potato | nucleus | 40.74 | 31.69 |
| CDY42007 | Canola | nucleus | 36.51 | 31.51 |
| CDX70283 | Canola | nucleus | 36.51 | 31.51 |
| CDX67451 | Canola | nucleus | 24.87 | 26.4 |
| CDY11680 | Canola | nucleus | 24.34 | 25.84 |
| CDY69536 | Canola | nucleus | 20.11 | 24.36 |
| CDX99719 | Canola | nucleus | 24.34 | 23.59 |
| CDY28803 | Canola | nucleus | 19.05 | 23.08 |
| CDY69290 | Canola | nucleus | 29.63 | 22.4 |
| CDY71532 | Canola | nucleus | 26.98 | 22.37 |
| CDX89136 | Canola | nucleus | 26.45 | 21.83 |
| CDY48391 | Canola | nucleus | 29.1 | 21.83 |
| CDY69034 | Canola | nucleus | 30.69 | 21.64 |
| CDY44091 | Canola | nucleus | 30.16 | 21.43 |
| CDY52767 | Canola | nucleus | 28.57 | 21.26 |
| CDY46427 | Canola | nucleus | 28.57 | 21.26 |
| CDY57869 | Canola | nucleus | 24.87 | 20.43 |
| CDX69546 | Canola | nucleus | 33.33 | 20.39 |
| CDY70306 | Canola | nucleus | 31.22 | 20.21 |
| CDX85054 | Canola | nucleus | 32.8 | 20.2 |
| CDX76591 | Canola | nucleus | 24.34 | 20.09 |
| CDX70596 | Canola | nucleus | 32.28 | 20.07 |
| CDX75697 | Canola | nucleus | 31.22 | 20.0 |
| CDX69357 | Canola | nucleus | 31.22 | 20.0 |
| CDX78614 | Canola | nucleus | 31.75 | 19.93 |
| CDY25596 | Canola | nucleus | 28.04 | 19.92 |
| CDY39476 | Canola | nucleus | 29.63 | 19.86 |
| CDY25597 | Canola | nucleus | 31.22 | 19.73 |
| CDY38759 | Canola | nucleus | 29.63 | 19.72 |
| CDY28696 | Canola | nucleus | 27.51 | 19.7 |
| CDY41547 | Canola | nucleus | 26.45 | 19.68 |
| CDY23547 | Canola | nucleus | 29.1 | 19.64 |
| CDY37519 | Canola | nucleus | 26.98 | 19.62 |
| CDX89467 | Canola | nucleus | 30.69 | 19.33 |
| CDY13761 | Canola | nucleus | 31.75 | 19.29 |
| CDX80037 | Canola | nucleus | 25.93 | 19.29 |
| CDY27308 | Canola | nucleus | 23.28 | 19.21 |
| CDY11659 | Canola | nucleus | 29.1 | 19.1 |
| CDX76923 | Canola | nucleus | 31.22 | 19.03 |
| CDX90376 | Canola | nucleus | 28.57 | 18.95 |
| CDY70870 | Canola | nucleus | 30.16 | 18.94 |
| CDY28673 | Canola | nucleus | 26.98 | 18.75 |
| CDY69618 | Canola | nucleus | 30.16 | 18.69 |
| CDY49056 | Canola | nucleus | 25.93 | 18.63 |
| CDY37819 | Canola | nucleus | 30.16 | 18.39 |
| CDY33967 | Canola | nucleus | 30.16 | 18.39 |
| CDY67332 | Canola | nucleus | 29.63 | 18.36 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078H8I3 | UniProt:A0A078H8I3 | EnsemblPlants:CDY33168 | ProteinID:CDY33168 |
| ProteinID:CDY33168.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00053887001 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF287 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EAB430 | SEG:seg | : | : | : |
Description
BnaC04g08710DBnaC04g08710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8I3]
Coordinates
chrLK032308:+:111916..112694
Molecular Weight (calculated)
22164.2 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.894
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDNMECWS SPFINDQSSS NFIYPFHSFN NVSGTRVVTQ GGPLHEHYYA PSAMVESSFG EASNTNNGYE TKKKKMTNEQ LKLLEISFQE EMKLDPERKM
101: KLSKELGLQP RQIAVWFQNR KARWKNKQLE HLYESLRQEF DIICQEKKLL QEELIQLKAM IRENGASNNK QQTWENACSQ AMQAQFQLN
101: KLSKELGLQP RQIAVWFQNR KARWKNKQLE HLYESLRQEF DIICQEKKLL QEELIQLKAM IRENGASNNK QQTWENACSQ AMQAQFQLN
001: MEYWSSSFID GASSSSFISP FYNFDHFSGN QDNRCLGTMM GAQQDILHVP LAMVESGYGE ESNSFNGQEK KKKKMTSEQL KFLERSFQEE IKLNPDRKMK
101: LNPDRKMKLS KELGLQPRQI AVWFQNRKAR WKNKQLEHLY ESLRQEFDIV SREKELLQEE LIQLKSMIRE DSSCKKKQTW EKACS
101: LNPDRKMKLS KELGLQPRQI AVWFQNRKAR WKNKQLEHLY ESLRQEFDIV SREKELLQEE LIQLKSMIRE DSSCKKKQTW EKACS
Arabidopsis Description
ATHB-22Homeobox-leucine zipper protein ATHB-22 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSR7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.