Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011808.1-P | Field mustard | nucleus | 97.97 | 97.97 |
| CDX75697 | Canola | nucleus | 97.97 | 97.97 |
| AT4G40060.1 | Thale cress | nucleus | 85.42 | 85.71 |
| CDX90376 | Canola | nucleus | 80.0 | 82.81 |
| CDY39476 | Canola | nucleus | 78.98 | 82.62 |
| CDY25596 | Canola | nucleus | 65.08 | 72.18 |
| CDY25597 | Canola | nucleus | 72.54 | 71.57 |
| CDX89467 | Canola | nucleus | 71.86 | 70.67 |
| CDX76923 | Canola | nucleus | 73.56 | 70.0 |
| CDY13761 | Canola | nucleus | 72.88 | 69.13 |
| CDX99719 | Canola | nucleus | 38.64 | 58.46 |
| CDY48942 | Canola | nucleus | 31.53 | 57.41 |
| KRH59287 | Soybean | nucleus | 49.15 | 47.23 |
| KRH43132 | Soybean | nucleus | 49.15 | 46.47 |
| KRH31331 | Soybean | nucleus | 49.15 | 46.18 |
| KRG97544 | Soybean | nucleus | 49.83 | 45.65 |
| Solyc05g051460.2.1 | Tomato | nucleus | 46.78 | 44.09 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 49.15 | 43.28 |
| CDY37819 | Canola | nucleus | 45.42 | 43.23 |
| CDY69618 | Canola | nucleus | 44.41 | 42.95 |
| CDY67332 | Canola | nucleus | 44.07 | 42.62 |
| CDY33967 | Canola | nucleus | 44.75 | 42.58 |
| PGSC0003DMT400043251 | Potato | nucleus | 46.78 | 42.46 |
| PGSC0003DMT400041655 | Potato | nucleus | 48.47 | 41.09 |
| Solyc11g010270.1.1 | Tomato | nucleus | 48.14 | 40.57 |
| CDY11680 | Canola | nucleus | 24.07 | 39.89 |
| CDX67451 | Canola | nucleus | 23.39 | 38.76 |
| CDY37519 | Canola | nucleus | 29.15 | 33.08 |
| CDY69290 | Canola | nucleus | 27.8 | 32.8 |
| CDY28673 | Canola | nucleus | 30.17 | 32.72 |
| CDY49056 | Canola | nucleus | 29.15 | 32.7 |
| CDY28803 | Canola | nucleus | 17.29 | 32.69 |
| CDY69536 | Canola | nucleus | 16.61 | 31.41 |
| CDY69034 | Canola | nucleus | 28.47 | 31.34 |
| CDY33168 | Canola | nucleus | 20.0 | 31.22 |
| CDX75029 | Canola | nucleus | 19.66 | 31.02 |
| CDY48391 | Canola | nucleus | 26.1 | 30.56 |
| CDY44091 | Canola | nucleus | 27.12 | 30.08 |
| CDY23547 | Canola | nucleus | 27.8 | 29.29 |
| CDY38759 | Canola | nucleus | 28.14 | 29.23 |
| CDY46427 | Canola | nucleus | 25.08 | 29.13 |
| CDY11659 | Canola | nucleus | 28.14 | 28.82 |
| CDY28696 | Canola | nucleus | 25.76 | 28.79 |
| CDY52767 | Canola | nucleus | 24.75 | 28.74 |
| CDY70870 | Canola | nucleus | 28.47 | 27.91 |
| CDY70306 | Canola | nucleus | 27.12 | 27.4 |
| CDX78614 | Canola | nucleus | 27.8 | 27.24 |
| CDY57869 | Canola | nucleus | 21.02 | 26.96 |
| CDX69546 | Canola | nucleus | 28.14 | 26.86 |
| CDX85054 | Canola | nucleus | 27.8 | 26.71 |
| CDX70596 | Canola | nucleus | 27.46 | 26.64 |
| CDY71532 | Canola | nucleus | 20.34 | 26.32 |
| CDX76591 | Canola | nucleus | 20.34 | 26.2 |
| CDX80887 | Canola | nucleus | 19.32 | 26.15 |
| CDX89136 | Canola | nucleus | 20.0 | 25.76 |
| CDY27308 | Canola | nucleus | 19.66 | 25.33 |
| CDY11269 | Canola | nucleus | 18.64 | 25.23 |
| CDY41547 | Canola | nucleus | 21.69 | 25.2 |
| CDY04896 | Canola | nucleus | 19.32 | 25.11 |
| CDX80037 | Canola | nucleus | 21.36 | 24.8 |
| CDX70283 | Canola | nucleus | 17.97 | 24.2 |
| CDY42007 | Canola | nucleus | 17.97 | 24.2 |
| CDX70284 | Canola | nucleus | 18.31 | 23.48 |
| CDY71047 | Canola | nucleus | 18.31 | 23.48 |
| CDY10356 | Canola | nucleus | 18.31 | 23.48 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078BYE5 | EnsemblPlants:CDX69357 | ProteinID:CDX69357 | ProteinID:CDX69357.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00131207001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF196 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEEAC8 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g00960D
Coordinates
chrLK031789:+:4355155..4356794
Molecular Weight (calculated)
33448.5 Da
IEP (calculated)
4.648
GRAVY (calculated)
-0.944
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKRLSSSDS MCGLVSNSPD EQSPRGYGGN FQSMLDGYEE DGTIVEEYSG NHHHMGLSEK KRRLRVDQVK ALEKNFELEN KLEPERKTKL AQELGLQPRQ
101: VAVWFQNRRA RWKTKQLEKD YGLLKSQYDS LRHNFDSLRR DNDSLLQEIS KMKGKINGEE EEDNNNVKAT TESDISAVKE EEDPIPSSPP QFLEHSTCFN
201: YRRSFTDLRD LMPNPVVEAG SSDSCDSSAV LNEETSSENG RLTPPPATVA GGSFLQFVKT EDHDEFFSGE EACGGFFSDV QPPSLNWYSA SDHWT
101: VAVWFQNRRA RWKTKQLEKD YGLLKSQYDS LRHNFDSLRR DNDSLLQEIS KMKGKINGEE EEDNNNVKAT TESDISAVKE EEDPIPSSPP QFLEHSTCFN
201: YRRSFTDLRD LMPNPVVEAG SSDSCDSSAV LNEETSSENG RLTPPPATVA GGSFLQFVKT EDHDEFFSGE EACGGFFSDV QPPSLNWYSA SDHWT
001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
Arabidopsis Description
ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.