Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005259.1-P | Field mustard | nucleus | 97.86 | 97.86 |
| CDY33168 | Canola | nucleus | 94.12 | 93.12 |
| AT2G36610.1 | Thale cress | nucleus | 65.24 | 65.95 |
| KRH20007 | Soybean | nucleus | 45.99 | 38.91 |
| KRH32628 | Soybean | nucleus | 44.92 | 37.33 |
| CDY11269 | Canola | nucleus | 41.71 | 35.78 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 41.71 | 35.45 |
| CDX80887 | Canola | nucleus | 41.18 | 35.32 |
| CDX70284 | Canola | nucleus | 41.18 | 33.48 |
| CDY10356 | Canola | nucleus | 41.18 | 33.48 |
| CDY71047 | Canola | nucleus | 41.18 | 33.48 |
| CDY04896 | Canola | nucleus | 40.11 | 33.04 |
| CDY42007 | Canola | nucleus | 37.97 | 32.42 |
| CDX70283 | Canola | nucleus | 37.97 | 32.42 |
| Solyc09g008810.2.1 | Tomato | nucleus | 41.18 | 31.95 |
| CDY48942 | Canola | nucleus | 27.27 | 31.48 |
| PGSC0003DMT400006949 | Potato | nucleus | 40.64 | 31.28 |
| CDX67451 | Canola | nucleus | 25.13 | 26.4 |
| CDY11680 | Canola | nucleus | 24.6 | 25.84 |
| CDY69536 | Canola | nucleus | 19.79 | 23.72 |
| CDX99719 | Canola | nucleus | 24.6 | 23.59 |
| CDY28803 | Canola | nucleus | 18.72 | 22.44 |
| CDY69290 | Canola | nucleus | 29.95 | 22.4 |
| CDY71532 | Canola | nucleus | 27.27 | 22.37 |
| CDX89136 | Canola | nucleus | 26.74 | 21.83 |
| CDY48391 | Canola | nucleus | 28.88 | 21.43 |
| CDY69034 | Canola | nucleus | 30.48 | 21.27 |
| CDY44091 | Canola | nucleus | 29.95 | 21.05 |
| CDY70306 | Canola | nucleus | 32.09 | 20.55 |
| CDY52767 | Canola | nucleus | 27.81 | 20.47 |
| CDY46427 | Canola | nucleus | 27.81 | 20.47 |
| CDY57869 | Canola | nucleus | 25.13 | 20.43 |
| CDX69546 | Canola | nucleus | 33.69 | 20.39 |
| CDX85054 | Canola | nucleus | 33.16 | 20.2 |
| CDX76591 | Canola | nucleus | 24.6 | 20.09 |
| CDX70596 | Canola | nucleus | 32.62 | 20.07 |
| CDY37519 | Canola | nucleus | 27.81 | 20.0 |
| CDY41547 | Canola | nucleus | 26.74 | 19.68 |
| CDX75697 | Canola | nucleus | 31.02 | 19.66 |
| CDX69357 | Canola | nucleus | 31.02 | 19.66 |
| CDX78614 | Canola | nucleus | 31.55 | 19.6 |
| CDY25596 | Canola | nucleus | 27.81 | 19.55 |
| CDY39476 | Canola | nucleus | 29.41 | 19.5 |
| CDY28696 | Canola | nucleus | 27.27 | 19.32 |
| CDX80037 | Canola | nucleus | 26.2 | 19.29 |
| CDY23547 | Canola | nucleus | 28.88 | 19.29 |
| CDY27308 | Canola | nucleus | 23.53 | 19.21 |
| CDY28673 | Canola | nucleus | 27.81 | 19.12 |
| CDY25597 | Canola | nucleus | 30.48 | 19.06 |
| CDY38759 | Canola | nucleus | 28.88 | 19.01 |
| CDY49056 | Canola | nucleus | 26.74 | 19.01 |
| CDX90376 | Canola | nucleus | 28.88 | 18.95 |
| CDX89467 | Canola | nucleus | 29.95 | 18.67 |
| CDY13761 | Canola | nucleus | 31.02 | 18.65 |
| CDY11659 | Canola | nucleus | 28.34 | 18.4 |
| CDX76923 | Canola | nucleus | 30.48 | 18.39 |
| CDY70870 | Canola | nucleus | 29.41 | 18.27 |
| CDY69618 | Canola | nucleus | 29.41 | 18.03 |
| CDY37819 | Canola | nucleus | 29.41 | 17.74 |
| CDY33967 | Canola | nucleus | 29.41 | 17.74 |
| CDY67332 | Canola | nucleus | 28.88 | 17.7 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078CG13 | EnsemblPlants:CDX75029 | ProteinID:CDX75029 | ProteinID:CDX75029.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00117057001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF287 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EED077 | SEG:seg | : | : |
Description
BnaA05g07750D
Coordinates
chrLK031802:-:2047402..2048244
Molecular Weight (calculated)
21911.9 Da
IEP (calculated)
6.526
GRAVY (calculated)
-0.899
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDNMECWT SPFINGQSSS NFIYPFHSFN NVSGTILETQ GGRPLHEHYY AAPPAMVESS YGEASNTNNG YETKKKKMTN EQLKLLEISF QEEMKLDPER
101: KMKLSKELGL QPRQIAVWFQ NRKARWKNKQ LEHLYESLRQ EFDVICQEKK LLQEELIQLK AMIRENGASN NKQQTWENAL SAQFQLN
101: KMKLSKELGL QPRQIAVWFQ NRKARWKNKQ LEHLYESLRQ EFDVICQEKK LLQEELIQLK AMIRENGASN NKQQTWENAL SAQFQLN
001: MEYWSSSFID GASSSSFISP FYNFDHFSGN QDNRCLGTMM GAQQDILHVP LAMVESGYGE ESNSFNGQEK KKKKMTSEQL KFLERSFQEE IKLNPDRKMK
101: LNPDRKMKLS KELGLQPRQI AVWFQNRKAR WKNKQLEHLY ESLRQEFDIV SREKELLQEE LIQLKSMIRE DSSCKKKQTW EKACS
101: LNPDRKMKLS KELGLQPRQI AVWFQNRKAR WKNKQLEHLY ESLRQEFDIV SREKELLQEE LIQLKSMIRE DSSCKKKQTW EKACS
Arabidopsis Description
ATHB-22Homeobox-leucine zipper protein ATHB-22 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSR7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.