Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25597 | Canola | nucleus | 96.0 | 96.32 |
| CDY25596 | Canola | nucleus | 85.0 | 95.86 |
| Bra030238.1-P | Field mustard | nucleus | 94.67 | 95.62 |
| AT2G22430.1 | Thale cress | nucleus | 89.67 | 86.5 |
| CDX76923 | Canola | nucleus | 88.67 | 85.81 |
| CDY13761 | Canola | nucleus | 88.33 | 85.21 |
| CDX69357 | Canola | nucleus | 70.67 | 71.86 |
| CDX75697 | Canola | nucleus | 70.33 | 71.53 |
| CDY39476 | Canola | nucleus | 66.67 | 70.92 |
| CDX90376 | Canola | nucleus | 66.0 | 69.47 |
| CDX99719 | Canola | nucleus | 43.0 | 66.15 |
| CDY48942 | Canola | nucleus | 31.0 | 57.41 |
| KRH31331 | Soybean | nucleus | 52.0 | 49.68 |
| KRH59287 | Soybean | nucleus | 50.67 | 49.51 |
| KRH43132 | Soybean | nucleus | 50.67 | 48.72 |
| KRG97544 | Soybean | nucleus | 52.0 | 48.45 |
| Solyc05g051460.2.1 | Tomato | nucleus | 47.67 | 45.69 |
| CDY69618 | Canola | nucleus | 46.0 | 45.25 |
| CDY67332 | Canola | nucleus | 45.67 | 44.92 |
| CDY37819 | Canola | nucleus | 46.33 | 44.84 |
| CDY33967 | Canola | nucleus | 46.33 | 44.84 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 50.0 | 44.78 |
| PGSC0003DMT400041655 | Potato | nucleus | 51.33 | 44.25 |
| Solyc11g010270.1.1 | Tomato | nucleus | 51.33 | 44.0 |
| PGSC0003DMT400043251 | Potato | nucleus | 47.33 | 43.69 |
| CDY11680 | Canola | nucleus | 24.33 | 41.01 |
| CDX67451 | Canola | nucleus | 24.33 | 41.01 |
| CDY28803 | Canola | nucleus | 17.67 | 33.97 |
| CDY69536 | Canola | nucleus | 17.33 | 33.33 |
| CDY28673 | Canola | nucleus | 28.33 | 31.25 |
| CDY69290 | Canola | nucleus | 26.0 | 31.2 |
| CDY37519 | Canola | nucleus | 27.0 | 31.15 |
| CDY33168 | Canola | nucleus | 19.33 | 30.69 |
| CDY48391 | Canola | nucleus | 25.67 | 30.56 |
| CDY49056 | Canola | nucleus | 26.67 | 30.42 |
| CDX75029 | Canola | nucleus | 18.67 | 29.95 |
| CDY69034 | Canola | nucleus | 26.67 | 29.85 |
| CDY44091 | Canola | nucleus | 26.0 | 29.32 |
| CDY23547 | Canola | nucleus | 27.33 | 29.29 |
| CDY46427 | Canola | nucleus | 24.67 | 29.13 |
| CDY52767 | Canola | nucleus | 24.33 | 28.74 |
| CDY38759 | Canola | nucleus | 27.0 | 28.52 |
| CDY11659 | Canola | nucleus | 27.0 | 28.12 |
| CDY27308 | Canola | nucleus | 21.0 | 27.51 |
| CDY57869 | Canola | nucleus | 21.0 | 27.39 |
| CDY41547 | Canola | nucleus | 23.0 | 27.17 |
| CDX78614 | Canola | nucleus | 27.0 | 26.91 |
| CDY70870 | Canola | nucleus | 27.0 | 26.91 |
| CDY28696 | Canola | nucleus | 23.67 | 26.89 |
| CDX69546 | Canola | nucleus | 27.67 | 26.86 |
| CDX80037 | Canola | nucleus | 22.67 | 26.77 |
| CDY70306 | Canola | nucleus | 26.0 | 26.71 |
| CDX85054 | Canola | nucleus | 27.33 | 26.71 |
| CDX76591 | Canola | nucleus | 20.33 | 26.64 |
| CDX70596 | Canola | nucleus | 26.67 | 26.32 |
| CDX89136 | Canola | nucleus | 20.0 | 26.2 |
| CDY71532 | Canola | nucleus | 19.67 | 25.88 |
| CDX80887 | Canola | nucleus | 18.67 | 25.69 |
| CDY11269 | Canola | nucleus | 18.67 | 25.69 |
| CDX70284 | Canola | nucleus | 19.0 | 24.78 |
| CDY10356 | Canola | nucleus | 19.0 | 24.78 |
| CDY04896 | Canola | nucleus | 18.67 | 24.67 |
| CDY71047 | Canola | nucleus | 18.67 | 24.35 |
| CDX70283 | Canola | nucleus | 17.33 | 23.74 |
| CDY42007 | Canola | nucleus | 17.33 | 23.74 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078DKR0 | EnsemblPlants:CDX89467 | ProteinID:CDX89467 | ProteinID:CDX89467.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00149729001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF524 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EBDD91 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g34860D
Coordinates
chrLK031859:-:192767..194323
Molecular Weight (calculated)
33906.8 Da
IEP (calculated)
4.366
GRAVY (calculated)
-0.853
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKRLRSSDS VGGLISLCHT SSTDEQSPRR YGSMLEGYDE DEEEAIAEER GQTEKKRRLS INQVKALEKN FELENKLEPE RKVKLAQELG LQTRQVAVWF
101: QNRRARWKTK QLEKDYGVLK TQYDSLRHNF DSLRSDNESL LQEISKLKSK LNGGEEEEEE NNAVAMESDF SVKEEEVSLP ENITEEPPSS PPELLEHSDS
201: FNYRSFTDLR DLLPLKAAAS SFAAAGSSDS GDSSAVLNEE SSSNVTVTPT AVPGGSFFQF VKMEQTEDHD DFLSGEEACG FFSDEQPPSL HWYSAVDHWT
101: QNRRARWKTK QLEKDYGVLK TQYDSLRHNF DSLRSDNESL LQEISKLKSK LNGGEEEEEE NNAVAMESDF SVKEEEVSLP ENITEEPPSS PPELLEHSDS
201: FNYRSFTDLR DLLPLKAAAS SFAAAGSSDS GDSSAVLNEE SSSNVTVTPT AVPGGSFFQF VKMEQTEDHD DFLSGEEACG FFSDEQPPSL HWYSAVDHWT
001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
Arabidopsis Description
ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.