Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25596 | Canola | nucleus | 77.81 | 90.98 |
| CDY25597 | Canola | nucleus | 87.46 | 90.97 |
| CDX89467 | Canola | nucleus | 86.5 | 89.67 |
| Bra030238.1-P | Field mustard | nucleus | 85.53 | 89.56 |
| CDX76923 | Canola | nucleus | 88.1 | 88.39 |
| CDY13761 | Canola | nucleus | 88.1 | 88.1 |
| Bra038523.1-P | Field mustard | nucleus | 88.1 | 88.1 |
| AT4G40060.1 | Thale cress | nucleus | 72.67 | 76.87 |
| CDX99719 | Canola | nucleus | 42.77 | 68.21 |
| KRH59287 | Soybean | nucleus | 51.45 | 52.12 |
| KRH43132 | Soybean | nucleus | 51.77 | 51.6 |
| KRH31331 | Soybean | nucleus | 52.09 | 51.59 |
| KRG97544 | Soybean | nucleus | 53.05 | 51.24 |
| Solyc05g051460.2.1 | Tomato | nucleus | 47.59 | 47.28 |
| PGSC0003DMT400041655 | Potato | nucleus | 51.45 | 45.98 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 49.52 | 45.97 |
| Solyc11g010270.1.1 | Tomato | nucleus | 51.13 | 45.43 |
| PGSC0003DMT400043251 | Potato | nucleus | 47.27 | 45.23 |
| AT5G65310.1 | Thale cress | nucleus | 45.34 | 45.19 |
| AT3G01470.1 | Thale cress | nucleus | 29.26 | 33.46 |
| AT5G53980.1 | Thale cress | nucleus | 16.08 | 32.05 |
| AT2G36610.1 | Thale cress | nucleus | 18.97 | 31.89 |
| AT1G26960.1 | Thale cress | nucleus | 24.12 | 29.41 |
| AT3G01220.1 | Thale cress | nucleus | 27.01 | 29.37 |
| AT1G69780.1 | Thale cress | nucleus | 27.33 | 28.91 |
| AT5G15150.1 | Thale cress | nucleus | 27.01 | 26.75 |
| AT2G46680.1 | Thale cress | nucleus | 21.86 | 26.36 |
| AT5G03790.1 | Thale cress | nucleus | 19.61 | 25.96 |
| AT3G61890.1 | Thale cress | nucleus | 19.61 | 25.96 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:816775 | UniProt:A0A178VSN9 | ProteinID:AAD22367.2 | ProteinID:AAD41726.1 |
| ProteinID:AEC07305.1 | ArrayExpress:AT2G22430 | EnsemblPlantsGene:AT2G22430 | RefSeq:AT2G22430 | TAIR:AT2G22430 | RefSeq:AT2G22430-TAIR-G |
| EnsemblPlants:AT2G22430.1 | TAIR:AT2G22430.1 | Symbol:ATHB6 | EMBL:AY060569 | EMBL:AY063819 | EMBL:AY094457 |
| EMBL:AY122903 | Unigene:At.25257 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0045893 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo |
| RefSeq:NP_565536.1 | ProteinID:OAP09457.1 | UniProt:P46668 | PFAM:PF00046 | PFAM:PF02183 | PO:PO:0000013 |
| PO:PO:0000017 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020121 | PO:PO:0020127 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF524 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI00000014D0 | EMBL:X67034 |
| SEG:seg | : | : | : | : | : |
Description
ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
Coordinates
chr2:-:9525988..9527845
Molecular Weight (calculated)
35019.3 Da
IEP (calculated)
4.471
GRAVY (calculated)
-0.802
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.