Factsheet for AT1G26960.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016300.1-P	Field mustard	nucleus	85.88	86.22
CDY46427	Canola	nucleus	85.88	86.22
CDY52767	Canola	nucleus	85.1	85.43
AT1G69780.1	Thale cress	nucleus	74.51	64.63
AT3G01220.1	Thale cress	nucleus	45.1	40.21
AT5G15150.1	Thale cress	nucleus	43.53	35.35
AT5G53980.1	Thale cress	nucleus	17.25	28.21
AT2G36610.1	Thale cress	nucleus	20.0	27.57
AT3G01470.1	Thale cress	nucleus	28.24	26.47
AT4G40060.1	Thale cress	nucleus	28.63	24.83
AT2G22430.1	Thale cress	nucleus	29.41	24.12
AT5G65310.1	Thale cress	nucleus	28.24	23.08
AT3G61890.1	Thale cress	nucleus	20.78	22.55
AT5G03790.1	Thale cress	nucleus	20.0	21.7
AT2G46680.1	Thale cress	nucleus	20.78	20.54

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:839587	UniProt:A0A178WKR8	ProteinID:AAD14502.1	ProteinID:AEE30764.1
EMBL:AK228056	ArrayExpress:AT1G26960	EnsemblPlantsGene:AT1G26960	RefSeq:AT1G26960	TAIR:AT1G26960	RefSeq:AT1G26960-TAIR-G
EnsemblPlants:AT1G26960.1	TAIR:AT1G26960.1	EMBL:AY084913	Symbol:AtHB23	EMBL:BT009727	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009739	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	RefSeq:NP_564268.1	ProteinID:OAP18806.1	PFAM:PF00046	PFAM:PF02183	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001052	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0004726	PO:PO:0007064	PO:PO:0007095
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0009001
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0020148	PO:PO:0025022
PO:PO:0025281	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF176
UniProt:Q8LFD3	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000005ECAD	:

Description

ATHB-23Homeobox-leucine zipper protein ATHB-23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD3]

Coordinates

chr1:+:9355827..9357502

Molecular Weight (calculated)

29664.6 Da

IEP (calculated)

4.802

GRAVY (calculated)

-1.049

Length

255 amino acids

Sequence
(BLAST)

001: MSCNNNGLAF FPENFSLQNH HQEEEDHPQL LQDFHGFLGK RSPMNNVQGF CNLDMNGDEE YSDDGSKMGE KKRRLNMEQL KALEKDFELG NKLESDRKLE
101: LARALGLQPR QIAIWFQNRR ARSKTKQLEK DYDMLKRQFE SLRDENEVLQ TQNQKLQAQV MALKSREPIE SINLNKETEG SCSDRSENIS GDIRPPEIDS
201: QFALGHPPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID DQSGFWPWLD QQQYN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.