Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28803 | Canola | nucleus | 84.62 | 84.62 |
| Bra022687.1-P | Field mustard | nucleus | 84.62 | 84.62 |
| CDY69536 | Canola | nucleus | 83.33 | 83.33 |
| VIT_19s0014g02110.t01 | Wine grape | nucleus | 43.59 | 42.24 |
| VIT_10s0003g00380.t01 | Wine grape | nucleus | 46.15 | 42.11 |
| PGSC0003DMT400081296 | Potato | nucleus | 44.87 | 39.11 |
| Solyc02g077590.1.1 | Tomato | nucleus | 42.95 | 37.43 |
| Solyc07g062790.1.1 | Tomato | nucleus | 40.38 | 36.21 |
| KRH26193 | Soybean | nucleus | 44.23 | 35.75 |
| KRH55168 | Soybean | nucleus | 45.51 | 35.5 |
| PGSC0003DMT400032390 | Potato | nucleus | 38.46 | 33.9 |
| PGSC0003DMT400054818 | Potato | nucleus | 42.31 | 31.13 |
| AT2G36610.1 | Thale cress | nucleus | 24.36 | 20.54 |
| AT3G01470.1 | Thale cress | nucleus | 31.41 | 18.01 |
| AT5G03790.1 | Thale cress | nucleus | 26.92 | 17.87 |
| AT3G61890.1 | Thale cress | nucleus | 26.28 | 17.45 |
| AT1G26960.1 | Thale cress | nucleus | 28.21 | 17.25 |
| AT2G22430.1 | Thale cress | nucleus | 32.05 | 16.08 |
| AT4G40060.1 | Thale cress | nucleus | 30.13 | 15.99 |
| AT1G69780.1 | Thale cress | nucleus | 29.49 | 15.65 |
| AT3G01220.1 | Thale cress | nucleus | 28.21 | 15.38 |
| AT5G65310.1 | Thale cress | nucleus | 30.13 | 15.06 |
| AT5G15150.1 | Thale cress | nucleus | 28.21 | 14.01 |
| AT2G46680.1 | Thale cress | nucleus | 23.08 | 13.95 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:835481 | ProteinID:AED96435.1 | EMBL:AK229211 | ArrayExpress:AT5G53980 |
| EnsemblPlantsGene:AT5G53980 | RefSeq:AT5G53980 | TAIR:AT5G53980 | RefSeq:AT5G53980-TAIR-G | EnsemblPlants:AT5G53980.1 | TAIR:AT5G53980.1 |
| Symbol:ATHB52 | ProteinID:BAB10728.1 | EMBL:BT015927 | EMBL:BT021920 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009646 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | RefSeq:NP_200209.1 |
| PFAM:PF00046 | PO:PO:0007131 | PO:PO:0009005 | PO:PO:0009046 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF257 | UniProt:Q9FN29 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000009EFDD |
Description
ATHB-52Homeobox-leucine zipper protein ATHB-52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN29]
Coordinates
chr5:+:21913883..21914866
Molecular Weight (calculated)
17935.0 Da
IEP (calculated)
7.985
GRAVY (calculated)
-0.875
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.