Factsheet for PGSC0003DMT400032390

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009136
PGSC0003DMT400018364
PGSC0003DMT400053945
PGSC0003DMT400055322
PGSC0003DMT400066939

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53980.1	PGSC0003DMT400009136	AT2G18060.1	21245844
AT5G53980.1	PGSC0003DMT400018364	AT3G03200.1	21245844
AT5G53980.1	PGSC0003DMT400055322	AT3G03200.1	21245844
AT5G53980.1	PGSC0003DMT400053945	AT3G60580.1	21245844
AT5G53980.1	PGSC0003DMT400066939	AT3G60580.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062790.1.1	Tomato	nucleus	85.88	87.36
VIT_19s0014g02110.t01	Wine grape	nucleus	47.46	52.17
PGSC0003DMT400054818	Potato	nucleus	58.19	48.58
PGSC0003DMT400081296	Potato	nucleus	41.24	40.78
AT5G53980.1	Thale cress	nucleus	33.9	38.46
CDY69536	Canola	nucleus	33.33	37.82
Bra022687.1-P	Field mustard	nucleus	32.77	37.18
CDY28803	Canola	nucleus	32.2	36.54
KRH55168	Soybean	nucleus	38.98	34.5
KRH26193	Soybean	nucleus	37.29	34.2
PGSC0003DMT400002259	Potato	nucleus	29.38	22.13
PGSC0003DMT400047622	Potato	nucleus	25.99	21.5
PGSC0003DMT400017751	Potato	nucleus	25.99	20.44
PGSC0003DMT400003586	Potato	nucleus	27.12	20.08
PGSC0003DMT400006949	Potato	nucleus	27.12	19.75
PGSC0003DMT400013968	Potato	nucleus	24.86	19.56
PGSC0003DMT400000694	Potato	nucleus	25.42	17.86
PGSC0003DMT400065805	Potato	nucleus	30.51	17.65
PGSC0003DMT400001322	Potato	nucleus	26.55	16.49
PGSC0003DMT400079230	Potato	nucleus	27.12	16.44
PGSC0003DMT400045471	Potato	nucleus	27.68	16.28
PGSC0003DMT400065207	Potato	nucleus	28.81	15.6
PGSC0003DMT400007376	Potato	nucleus	25.99	15.54
PGSC0003DMT400043251	Potato	nucleus	27.68	15.08
PGSC0003DMT400041655	Potato	nucleus	28.81	14.66

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M1AXC8
PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG402012439	PGSC:PGSC0003DMG402012439	EnsemblPlants:PGSC0003DMT400032390	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF522	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002951FCD

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG402012439]

Coordinates

chr7:-:52950721..52951383

Molecular Weight (calculated)

20774.7 Da

IEP (calculated)

8.350

GRAVY (calculated)

-0.851

Length

177 amino acids

Sequence
(BLAST)

001: MNSSFNSQNL QKYSKHNKKR LNQEQVRLLE ASFDSTKKLD LEKKLQLARE LGVPPRQISI WYQNRRARWK NQCMENDYNA LQVKLENALS EKRQLEKETE
101: ILQGELEKAN EMLIGLKSGA QGQIREFRLS SSCCEDVISY SSKWVHNYEV NYCNLQIDEL YPMIGVEEGT KKCCSTW

Best Arabidopsis Sequence Match ( AT5G53980.1 )
(BLAST)

001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV

Arabidopsis Description

ATHB-52Homeobox-leucine zipper protein ATHB-52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.