Factsheet for Bra022687.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003422.1-P
Bra007545.1-P
Bra014483.1-P
Bra021366.1-P
Bra027722.1-P
Bra032009.1-P
Bra039915.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53980.1	Bra027722.1-P	AT1G64620.1	21245844
AT5G53980.1	Bra039915.1-P	AT2G18060.1	21245844
AT5G53980.1	Bra021366.1-P	AT3G03200.1	21245844
AT5G53980.1	Bra032009.1-P	AT3G03200.1	21245844
AT5G53980.1	Bra003422.1-P	AT3G60580.1	21245844
AT5G53980.1	Bra007545.1-P	AT3G60580.1	21245844
AT5G53980.1	Bra014483.1-P	AT3G60580.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28803	Canola	nucleus	96.15	96.15
AT5G53980.1	Thale cress	nucleus	84.62	84.62
VIT_10s0003g00380.t01	Wine grape	nucleus	45.51	41.52
VIT_19s0014g02110.t01	Wine grape	nucleus	41.67	40.37
PGSC0003DMT400081296	Potato	nucleus	43.59	37.99
Solyc02g077590.1.1	Tomato	nucleus	42.31	36.87
Solyc07g062790.1.1	Tomato	nucleus	38.46	34.48
KRH26193	Soybean	nucleus	42.31	34.2
KRH55168	Soybean	nucleus	43.59	34.0
PGSC0003DMT400032390	Potato	nucleus	37.18	32.77
PGSC0003DMT400054818	Potato	nucleus	42.95	31.6
Bra028454.1-P	Field mustard	nucleus	32.69	28.65
Bra009510.1-P	Field mustard	nucleus	30.13	20.43
Bra028820.1-P	Field mustard	nucleus	29.49	20.26
Bra005259.1-P	Field mustard	nucleus	23.72	19.79
Bra016300.1-P	Field mustard	nucleus	32.05	19.68
Bra040519.1-P	Field mustard	nucleus	33.33	18.98
Bra039116.1-P	Field mustard	nucleus	31.41	18.85
Bra039135.1-P	Field mustard	nucleus	32.05	18.38
Bra010642.1-P	Field mustard	nucleus	32.69	17.83
Bra007637.1-P	Field mustard	nucleus	26.28	17.83
Bra038523.1-P	Field mustard	nucleus	34.62	17.36
Bra030238.1-P	Field mustard	nucleus	32.69	17.17
Bra014417.1-P	Field mustard	nucleus	25.0	17.11
Bra003980.1-P	Field mustard	nucleus	27.56	17.06
Bra006285.1-P	Field mustard	nucleus	30.77	16.96
Bra011808.1-P	Field mustard	nucleus	32.05	16.95
Bra008717.1-P	Field mustard	nucleus	30.77	16.67
Bra023506.1-P	Field mustard	nucleus	30.77	16.61
Bra007881.1-P	Field mustard	nucleus	29.49	16.14
Bra016266.1-P	Field mustard	nucleus	29.49	15.97
Bra024377.1-P	Field mustard	nucleus	30.77	15.74
Bra004516.1-P	Field mustard	nucleus	24.36	14.96
Bra031866.1-P	Field mustard	nucleus	29.49	14.84
Bra039265.1-P	Field mustard	nucleus	21.15	14.41

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra022687	EnsemblPlants:Bra022687.1	EnsemblPlants:Bra022687.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009637	GO:GO:0009646	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4E1N7	PFAM:PF00046
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF257	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI0002546A31	:	:	:	:	:

Description

AT5G53980 (E=9e-074) ATHB52 | ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52); transcription factor

Coordinates

chrA02:-:7999821..8000291

Molecular Weight (calculated)

17923.1 Da

IEP (calculated)

7.969

GRAVY (calculated)

-0.836

Length

156 amino acids

Sequence
(BLAST)

001: MENPQGQSRN KKKRLTQDQV RQLEKCFTLN NKLDPDLKLQ LSNTLGLPQR QVAVWFQNKR ARSKTQSLEL QYCNLQSKLE AVLSDKAKLE HKVQFLQDEL
101: KRSRNQLALF THQDSPVDDS NLGSCEEGHD NQVVVFDELY DCFVTSGHGS SSTSWV

Best Arabidopsis Sequence Match ( AT5G53980.1 )
(BLAST)

001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV

Arabidopsis Description

ATHB-52Homeobox-leucine zipper protein ATHB-52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.