Factsheet for Bra024377.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67332	Canola	nucleus	99.34	99.34
CDY69618	Canola	nucleus	97.05	97.05
Bra031866.1-P	Field mustard	nucleus	82.95	81.61
AT5G65310.1	Thale cress	nucleus	79.34	77.56
KRH43132	Soybean	nucleus	48.2	47.12
KRH59287	Soybean	nucleus	47.21	46.91
Bra030238.1-P	Field mustard	nucleus	44.92	46.13
KRH31331	Soybean	nucleus	46.89	45.54
Solyc05g051460.2.1	Tomato	nucleus	45.57	44.41
Bra038523.1-P	Field mustard	nucleus	45.25	44.37
KRG97544	Soybean	nucleus	46.56	44.1
Bra011808.1-P	Field mustard	nucleus	42.62	44.07
VIT_07s0191g00180.t01	Wine grape	nucleus	48.2	43.88
PGSC0003DMT400043251	Potato	nucleus	46.23	43.38
Bra010642.1-P	Field mustard	nucleus	39.67	42.31
Solyc11g010270.1.1	Tomato	nucleus	47.54	41.43
PGSC0003DMT400041655	Potato	nucleus	47.21	41.38
Bra028454.1-P	Field mustard	nucleus	20.98	35.96
Bra003980.1-P	Field mustard	nucleus	25.9	31.35
Bra022687.1-P	Field mustard	nucleus	15.74	30.77
Bra007881.1-P	Field mustard	nucleus	28.2	30.18
Bra016300.1-P	Field mustard	nucleus	24.59	29.53
Bra016266.1-P	Field mustard	nucleus	27.87	29.51
Bra039116.1-P	Field mustard	nucleus	24.92	29.23
Bra040519.1-P	Field mustard	nucleus	26.23	29.2
Bra005259.1-P	Field mustard	nucleus	17.38	28.34
Bra039135.1-P	Field mustard	nucleus	25.25	28.31
Bra007637.1-P	Field mustard	nucleus	20.66	27.39
Bra028820.1-P	Field mustard	nucleus	20.33	27.31
Bra006285.1-P	Field mustard	nucleus	24.92	26.86
Bra014417.1-P	Field mustard	nucleus	20.0	26.75
Bra039265.1-P	Field mustard	nucleus	20.0	26.64
Bra009510.1-P	Field mustard	nucleus	20.0	26.52
Bra008717.1-P	Field mustard	nucleus	24.92	26.39
Bra023506.1-P	Field mustard	nucleus	24.92	26.3
Bra004516.1-P	Field mustard	nucleus	21.31	25.59

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra024377	EnsemblPlants:Bra024377.1	EnsemblPlants:Bra024377.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4E6H3	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF196
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000253F506	SEG:seg	:	:

Description

AT5G65310 (E=4e-120) ATHB5, ATHB-5 | ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5); protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor

Coordinates

chrA06:-:15318971..15320364

Molecular Weight (calculated)

34213.0 Da

IEP (calculated)

4.817

GRAVY (calculated)

-0.644

Length

305 amino acids

Sequence
(BLAST)

001: MKRSRGSSDS LSRFLPICHS ATDNQLSPRP TATGFLYSGT GDYSPMFDCL EDGSLEDIAV GHASSTAATE KKRRLSVEQV KALEKNFEID NKLEPERKVK
101: LAQELGLQPR QVAIWFQNRR ARWKTKQLER DYGVLKSNFD SLKRSRDSLQ RDNDSLHAEI KQLRAKLNVD GISRSSSNAS TEENVLVKAD ETVMPSNKVL
201: ELNQRPLPPP PHIPTATEAP ALELEYEMLS IFPRAEIFRE DPADSSDSSA ILNEEYSPTA AEAAAAVEMS TMGCFGQFVK MEEHEDLFSG EEACKLFADN
301: EQWYC

Best Arabidopsis Sequence Match ( AT5G65310.1 )
(BLAST)

001: MKRSRGSSDS LSGFLPIRHS TTDKQISPRP TTTGFLYSGA GDYSQMFDAL EDDGSLEDLG GVGHASSTAA EKKRRLGVEQ VKALEKNFEI DNKLEPERKV
101: KLAQELGLQP RQVAIWFQNR RARWKTKQLE RDYGVLKSNF DALKRNRDSL QRDNDSLLGQ IKELKAKLNV EGVKGIEENG ALKAVEANQS VMANNEVLEL
201: SHRSPSPPPH IPTDAPTSEL AFEMFSIFPR TENFRDDPAD SSDSSAVLNE EYSPNTVEAA GAVAATTVEM STMGCFSQFV KMEEHEDLFS GEEACKLFAD
301: NEQWYCSDQW NS

Arabidopsis Description

ATHB-5Homeobox-leucine zipper protein ATHB-5 [Source:UniProtKB/Swiss-Prot;Acc:P46667]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.