Factsheet for Bra016300.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46427	Canola	nucleus	100.0	100.0
CDY52767	Canola	nucleus	98.82	98.82
AT1G26960.1	Thale cress	nucleus	86.22	85.88
Bra007881.1-P	Field mustard	nucleus	73.23	65.26
Bra016266.1-P	Field mustard	nucleus	72.05	63.54
Bra003980.1-P	Field mustard	nucleus	56.3	56.75
Bra039135.1-P	Field mustard	nucleus	45.67	42.65
Bra006285.1-P	Field mustard	nucleus	45.67	40.99
Bra023506.1-P	Field mustard	nucleus	45.67	40.14
Bra008717.1-P	Field mustard	nucleus	44.49	39.24
Bra028454.1-P	Field mustard	nucleus	24.02	34.27
Bra022687.1-P	Field mustard	nucleus	19.68	32.05
Bra005259.1-P	Field mustard	nucleus	20.87	28.34
Bra039116.1-P	Field mustard	nucleus	26.38	25.77
Bra030238.1-P	Field mustard	nucleus	29.53	25.25
Bra031866.1-P	Field mustard	nucleus	30.32	24.84
Bra011808.1-P	Field mustard	nucleus	28.74	24.75
Bra028820.1-P	Field mustard	nucleus	22.05	24.67
Bra024377.1-P	Field mustard	nucleus	29.53	24.59
Bra040519.1-P	Field mustard	nucleus	26.38	24.45
Bra009510.1-P	Field mustard	nucleus	22.05	24.35
Bra038523.1-P	Field mustard	nucleus	29.53	24.12
Bra010642.1-P	Field mustard	nucleus	26.77	23.78
Bra014417.1-P	Field mustard	nucleus	19.68	21.93
Bra007637.1-P	Field mustard	nucleus	19.29	21.3
Bra039265.1-P	Field mustard	nucleus	18.5	20.52
Bra004516.1-P	Field mustard	nucleus	19.68	19.68

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra016300	EnsemblPlants:Bra016300.1	EnsemblPlants:Bra016300.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009739	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
UniProt:M4DIH3	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF176	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00025461F0	:

Description

AT1G26960 (E=2e-121) AtHB23 | AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor

Coordinates

chrA08:+:17781228..17782161

Molecular Weight (calculated)

29358.3 Da

IEP (calculated)

5.657

GRAVY (calculated)

-1.032

Length

254 amino acids

Sequence
(BLAST)

001: MSCNNGLAFF PANFSLQNHH QEEEDHPQYL LSSCTPPQDF HGFLGKRSPM QNVEGFCNLE MNGEEDFSDD GSKMGEKKRR LNMEQLKTLE KNFELGNKLD
101: SDRKLELARA LGLQPRQIAI WFQNRRARSK TKQLERDYDA LKRQFESLKD ENDLLQTQNQ KLQAQVIALK SKEPIESINL NKEEGSCSNR SENISGDIRP
201: GHPPPSPTAT TMQFFHNSSP EQRMVKEENS ISNMFCGMDD QTGFWPWLDQ QHYN

Best Arabidopsis Sequence Match ( AT1G26960.1 )
(BLAST)

001: MSCNNNGLAF FPENFSLQNH HQEEEDHPQL LQDFHGFLGK RSPMNNVQGF CNLDMNGDEE YSDDGSKMGE KKRRLNMEQL KALEKDFELG NKLESDRKLE
101: LARALGLQPR QIAIWFQNRR ARSKTKQLEK DYDMLKRQFE SLRDENEVLQ TQNQKLQAQV MALKSREPIE SINLNKETEG SCSDRSENIS GDIRPPEIDS
201: QFALGHPPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID DQSGFWPWLD QQQYN

Arabidopsis Description

ATHB-23Homeobox-leucine zipper protein ATHB-23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.