Factsheet for Bra008717.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85054	Canola	nucleus	99.65	93.49
CDX69546	Canola	nucleus	100.0	93.2
Bra006285.1-P	Field mustard	nucleus	88.19	89.75
Bra023506.1-P	Field mustard	nucleus	89.93	89.62
AT5G15150.1	Thale cress	nucleus	92.01	84.39
Bra039135.1-P	Field mustard	nucleus	67.01	70.96
KRG93515	Soybean	nucleus	54.17	53.42
KRH40114	Soybean	nucleus	50.0	53.33
KRH18490	Soybean	nucleus	53.12	52.58
KRH01157	Soybean	nucleus	48.26	51.87
PGSC0003DMT400003586	Potato	nucleus	39.93	48.12
PGSC0003DMT400017751	Potato	nucleus	36.81	47.11
Solyc02g067410.1.1	Tomato	nucleus	42.36	46.39
Bra016300.1-P	Field mustard	nucleus	39.24	44.49
Bra007881.1-P	Field mustard	nucleus	42.36	42.81
Solyc02g087840.2.1	Tomato	nucleus	45.83	42.72
Bra016266.1-P	Field mustard	nucleus	42.71	42.71
Bra003980.1-P	Field mustard	nucleus	36.81	42.06
Bra028454.1-P	Field mustard	nucleus	25.35	41.01
Bra005259.1-P	Field mustard	nucleus	21.18	32.62
Bra022687.1-P	Field mustard	nucleus	16.67	30.77
Bra039116.1-P	Field mustard	nucleus	27.43	30.38
Bra040519.1-P	Field mustard	nucleus	27.43	28.83
Bra030238.1-P	Field mustard	nucleus	28.82	27.95
Bra011808.1-P	Field mustard	nucleus	28.12	27.46
Bra010642.1-P	Field mustard	nucleus	26.74	26.92
Bra038523.1-P	Field mustard	nucleus	28.82	26.69
Bra009510.1-P	Field mustard	nucleus	21.18	26.52
Bra014417.1-P	Field mustard	nucleus	20.49	25.88
Bra007637.1-P	Field mustard	nucleus	20.49	25.65
Bra028820.1-P	Field mustard	nucleus	20.14	25.55
Bra031866.1-P	Field mustard	nucleus	27.43	25.48
Bra024377.1-P	Field mustard	nucleus	26.39	24.92
Bra004516.1-P	Field mustard	nucleus	20.83	23.62
Bra039265.1-P	Field mustard	nucleus	18.4	23.14

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra008717	EnsemblPlants:Bra008717.1	EnsemblPlants:Bra008717.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4CWX0	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF264
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002544FCC	SEG:seg	:	:

Description

AT5G15150 (E=4e-116) ATHB-3, HAT7, ATHB3 | ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA10:+:13544479..13545989

Molecular Weight (calculated)

33245.7 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.989

Length

288 amino acids

Sequence
(BLAST)

001: MAFPQHGFMF QQLHEDNTHH LPSPTSLPSC PPHLFYGGGN YMMNRSMSFT GVSDHHHLTQ KSPTTTNMHD QDQVGEEDNL SDDGSHMILG EKKKRLSLEQ
101: VMALEKSFEL GNKLEPERKM QLAKALGLQP RQIAIWFQNR RARWKTKQLE RDYDSLKKQF DVLKSDNDSL LANNKKLHAE LVALKKQDRQ ESAKIKREIA
201: EASWSNNEST ENDNNNSDIN HVNMIKDLFP SSIRSATTTT TSAHIDHQMV QDQGFCNMFS SIDETTSGSY WTWPDQQQQH HNHHHHFN

Best Arabidopsis Sequence Match ( AT5G15150.1 )
(BLAST)

001: MYMYEEERNN INNNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG GNYMMNRSMS FTGVSDHHHL TQKSPTTTNN MNDQDQVGEE
101: DNLSDDGSHM MLGEKKKRLN LEQVRALEKS FELGNKLEPE RKMQLAKALG LQPRQIAIWF QNRRARWKTK QLERDYDSLK KQFDVLKSDN DSLLAHNKKL
201: HAELVALKKH DRKESAKIKR EFAEASWSNN GSTENNHNNN SSDANHVSMI KDLFPSSIRS ATATTTSTHI DHQIVQDQDQ GFCNMFNGID ETTSASYWAW
301: PDQQQQHHNH HQFN

Arabidopsis Description

HAT7Homeobox-leucine zipper protein HAT7 [Source:UniProtKB/Swiss-Prot;Acc:Q00466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.