Factsheet for Bra039116.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37519	Canola	nucleus	100.0	100.0
CDY49056	Canola	nucleus	97.69	96.58
Bra040519.1-P	Field mustard	nucleus	80.0	75.91
AT3G01470.1	Thale cress	nucleus	77.31	73.9
PGSC0003DMT400001322	Potato	nucleus	60.38	55.09
Solyc02g086930.2.1	Tomato	nucleus	58.85	53.68
VIT_14s0066g01440.t01	Wine grape	nucleus	55.38	52.75
KRH20316	Soybean	nucleus	56.54	51.58
KRG93337	Soybean	nucleus	52.31	50.94
GSMUA_Achr5P05300_001	Banana	nucleus	35.77	45.15
GSMUA_Achr9P14570_001	Banana	nucleus	43.85	43.35
GSMUA_Achr3P06190_001	Banana	nucleus	44.23	40.64
GSMUA_Achr8P25940_001	Banana	nucleus	43.08	39.02
GSMUA_Achr9P18360_001	Banana	nucleus	42.31	38.87
Bra028454.1-P	Field mustard	nucleus	26.54	38.76
Zm00001d017920_P001	Maize	nucleus	48.08	37.88
KXG30829	Sorghum	nucleus	48.85	37.24
Zm00001d051749_P001	Maize	nucleus	47.69	36.58
TraesCS6A01G290800.1	Wheat	nucleus	47.31	36.18
Os02t0729700-01	Rice	nucleus	47.69	36.15
TraesCS6B01G321100.1	Wheat	nucleus	47.31	35.86
KXG25140	Sorghum	nucleus	36.54	34.55
Zm00001d032316_P001	Maize	nucleus	35.77	34.44
HORVU6Hr1G072810.7	Barley	nucleus	45.77	34.2
Zm00001d050310_P001	Maize	nucleus	35.38	33.82
TraesCS6D01G272000.1	Wheat	nucleus	46.92	32.62
Os09t0379600-00	Rice	nucleus	26.15	32.38
Bra022687.1-P	Field mustard	nucleus	18.85	31.41
TraesCS5D01G205000.1	Wheat	nucleus	34.23	29.77
Os08t0416000-01	Rice	nucleus	39.62	29.51
TraesCS5B01G197700.1	Wheat	nucleus	33.85	29.43
Bra003980.1-P	Field mustard	nucleus	28.46	29.37
TraesCS5A01G199300.1	Wheat	nucleus	33.85	29.33
Bra011808.1-P	Field mustard	nucleus	32.69	28.81
Bra039135.1-P	Field mustard	nucleus	29.23	27.94
Zm00001d005692_P001	Maize	nucleus	30.38	27.92
Bra006285.1-P	Field mustard	nucleus	30.0	27.56
Bra008717.1-P	Field mustard	nucleus	30.38	27.43
Bra010642.1-P	Field mustard	nucleus	30.0	27.27
Bra005259.1-P	Field mustard	nucleus	19.62	27.27
Bra030238.1-P	Field mustard	nucleus	31.15	27.27
Bra007637.1-P	Field mustard	nucleus	23.85	26.96
Bra014417.1-P	Field mustard	nucleus	23.46	26.75
Bra016266.1-P	Field mustard	nucleus	29.62	26.74
Bra038523.1-P	Field mustard	nucleus	31.92	26.69
Bra007881.1-P	Field mustard	nucleus	29.23	26.67
Bra023506.1-P	Field mustard	nucleus	29.62	26.64
Bra016300.1-P	Field mustard	nucleus	25.77	26.38
Bra004516.1-P	Field mustard	nucleus	25.77	26.38
Bra039265.1-P	Field mustard	nucleus	23.08	26.2
HORVU5Hr1G059410.2	Barley	nucleus	32.31	25.61
EER98832	Sorghum	nucleus	31.15	25.55
Bra024377.1-P	Field mustard	nucleus	29.23	24.92
Bra031866.1-P	Field mustard	nucleus	29.62	24.84
Bra028820.1-P	Field mustard	nucleus	21.15	24.23
Bra009510.1-P	Field mustard	nucleus	20.77	23.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra039116	EnsemblPlants:Bra039116.1	EnsemblPlants:Bra039116.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4FDE5	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF136	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0002547863	SEG:seg	:	:	:

Description

AT3G01470 (E=3e-090) ATHB-1, ATHB1, HD-ZIP-1, HAT5 | ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor

Coordinates

chrA05:-:23884643..23885851

Molecular Weight (calculated)

29937.8 Da

IEP (calculated)

5.215

GRAVY (calculated)

-0.830

Length

260 amino acids

Sequence
(BLAST)

001: MESNKFFFNP STSHGNMFFL GNLNPVVQGS MMNMEESSSK RRPFFCSPDD LLYDDVDYYD DQTPDKKRRL THEQVHLLEK SFEKENKLEP ERKTQLAKKL
101: GLQPRQVSVW FQNRRARWKT KQLERDFNLL KSSYDQLLSN YDSILKDNHL LRSQVTSLAG KVQAKEETAP CQVPESNQLD PVNLNRFEPA IKTEDRLSSG
201: SAVLDEDAPH QLRDSCDSYF PTIVPIHHSA EEDNNGSGND TGCFADVFVQ GESFGFWGWT

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.