Factsheet for HORVU6Hr1G072810.7

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G290800.1	Wheat	nucleus	84.48	86.47
TraesCS6B01G321100.1	Wheat	nucleus	85.06	86.3
TraesCS6D01G272000.1	Wheat	nucleus	83.91	78.07
KXG30829	Sorghum	nucleus	67.82	69.21
Os02t0729700-01	Rice	nucleus	68.1	69.1
Zm00001d017920_P001	Maize	nucleus	64.66	68.18
Zm00001d051749_P001	Maize	nucleus	63.51	65.19
GSMUA_Achr8P25940_001	Banana	nucleus	45.69	55.4
GSMUA_Achr9P18360_001	Banana	nucleus	43.39	53.36
Bra039116.1-P	Field mustard	nucleus	34.2	45.77
CDY37519	Canola	nucleus	34.2	45.77
VIT_14s0066g01440.t01	Wine grape	nucleus	35.63	45.42
AT3G01470.1	Thale cress	nucleus	35.06	44.85
CDY49056	Canola	nucleus	33.62	44.49
CDY28673	Canola	nucleus	34.77	44.49
Solyc02g086930.2.1	Tomato	nucleus	36.21	44.21
PGSC0003DMT400001322	Potato	nucleus	35.92	43.86
Bra040519.1-P	Field mustard	nucleus	34.48	43.8
KRG93337	Soybean	nucleus	33.33	43.45
KRH20316	Soybean	nucleus	33.62	41.05
HORVU5Hr1G070260.1	Barley	nucleus	25.0	32.58
HORVU5Hr1G059410.2	Barley	nucleus	29.6	31.4
HORVU4Hr1G075170.1	Barley	nucleus	20.11	27.34
HORVU5Hr1G081090.1	Barley	nucleus	17.53	24.4
HORVU4Hr1G078410.5	Barley	nucleus, plastid	22.7	24.01
HORVU2Hr1G092710.2	Barley	nucleus	17.53	22.93
HORVU4Hr1G075180.3	Barley	nucleus, plastid	24.14	21.32
HORVU6Hr1G061390.1	Barley	nucleus	18.1	19.81

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	UniProt:A0A287UNH7	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU6Hr1G072810	EnsemblPlants:HORVU6Hr1G072810.7	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF136	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI000B472DD9	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:505080027..505081373

Molecular Weight (calculated)

38084.5 Da

IEP (calculated)

4.317

GRAVY (calculated)

-0.718

Length

348 amino acids

Sequence
(BLAST)

001: WSPAGSSSTR RAPATDRCSS WTAAPAPPAC SIELGLPCLS DEGVRPVLGG MEEGRGVKRP FFTSPDDLLE EEYYDEQLPE KKRRLTPEQV HLLERSFEEE
101: NKLEPERKTE LARKLGLQPR QVAVWFQNRR ARWKTKTLER DFDRLKASFD ALRADHDALL QDNHRLRSQV VTLTEKMQEK EAPEGCFGAA VDASESEQAT
201: AEAKASLADA EEQAAAAEAF EVQQQQQQQL HVKDEERLSP GSGGSAILDA RDALLGGGCG LAGVVDSSVD SYCFPGGAGA DEYHECVVGP VAGGIQSEED
301: DGAGSDEGCS YYPDDAAAVF FAAAQGQHHH HTDDDDQDDG QISYWMWN

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.