Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040519.1-P | Field mustard | nucleus | 99.26 | 98.54 |
| CDY49056 | Canola | nucleus | 77.94 | 80.61 |
| CDY37519 | Canola | nucleus | 76.47 | 80.0 |
| AT3G01470.1 | Thale cress | nucleus | 76.1 | 76.1 |
| PGSC0003DMT400001322 | Potato | nucleus | 55.15 | 52.63 |
| VIT_14s0066g01440.t01 | Wine grape | nucleus | 52.57 | 52.38 |
| Solyc02g086930.2.1 | Tomato | nucleus | 54.04 | 51.58 |
| KRH20316 | Soybean | nucleus | 54.04 | 51.58 |
| KRG93337 | Soybean | nucleus | 49.63 | 50.56 |
| GSMUA_Achr9P14570_001 | Banana | nucleus | 44.85 | 46.39 |
| GSMUA_Achr5P05300_001 | Banana | nucleus | 34.56 | 45.63 |
| GSMUA_Achr3P06190_001 | Banana | nucleus | 43.38 | 41.7 |
| CDY48942 | Canola | nucleus | 24.63 | 41.36 |
| GSMUA_Achr9P18360_001 | Banana | nucleus | 41.91 | 40.28 |
| GSMUA_Achr8P25940_001 | Banana | nucleus | 42.28 | 40.07 |
| CDX67451 | Canola | nucleus | 25.74 | 39.33 |
| CDY11680 | Canola | nucleus | 25.74 | 39.33 |
| Zm00001d017920_P001 | Maize | nucleus | 46.32 | 38.18 |
| KXG30829 | Sorghum | nucleus | 47.06 | 37.54 |
| Zm00001d051749_P001 | Maize | nucleus | 45.59 | 36.58 |
| TraesCS6A01G290800.1 | Wheat | nucleus | 45.59 | 36.47 |
| Os02t0729700-01 | Rice | nucleus | 45.59 | 36.15 |
| TraesCS6B01G321100.1 | Wheat | nucleus | 45.59 | 36.15 |
| Zm00001d032316_P001 | Maize | nucleus | 34.56 | 34.81 |
| HORVU6Hr1G072810.7 | Barley | nucleus | 44.49 | 34.77 |
| Zm00001d050310_P001 | Maize | nucleus | 34.56 | 34.56 |
| KXG25140 | Sorghum | nucleus | 34.93 | 34.55 |
| CDY28803 | Canola | nucleus | 19.12 | 33.33 |
| TraesCS6D01G272000.1 | Wheat | nucleus | 45.22 | 32.89 |
| CDX99719 | Canola | nucleus | 23.53 | 32.82 |
| CDY69536 | Canola | nucleus | 18.75 | 32.69 |
| Os09t0379600-00 | Rice | nucleus | 24.63 | 31.9 |
| TraesCS5D01G205000.1 | Wheat | nucleus | 34.19 | 31.1 |
| CDY39476 | Canola | nucleus | 31.99 | 30.85 |
| CDY25596 | Canola | nucleus | 30.15 | 30.83 |
| CDY69290 | Canola | nucleus | 28.31 | 30.8 |
| TraesCS5B01G197700.1 | Wheat | nucleus | 33.82 | 30.77 |
| CDX69357 | Canola | nucleus | 32.72 | 30.17 |
| TraesCS5A01G199300.1 | Wheat | nucleus | 33.09 | 30.0 |
| CDX75697 | Canola | nucleus | 32.35 | 29.83 |
| CDY48391 | Canola | nucleus | 27.57 | 29.76 |
| Os08t0416000-01 | Rice | nucleus | 37.87 | 29.51 |
| CDX90376 | Canola | nucleus | 30.88 | 29.47 |
| Zm00001d005692_P001 | Maize | nucleus | 30.51 | 29.33 |
| CDY69034 | Canola | nucleus | 28.68 | 29.1 |
| CDY44091 | Canola | nucleus | 27.94 | 28.57 |
| CDY23547 | Canola | nucleus | 29.41 | 28.57 |
| CDY38759 | Canola | nucleus | 29.78 | 28.52 |
| CDY11659 | Canola | nucleus | 30.15 | 28.47 |
| CDY25597 | Canola | nucleus | 31.25 | 28.43 |
| CDX89467 | Canola | nucleus | 31.25 | 28.33 |
| CDY13761 | Canola | nucleus | 31.99 | 27.97 |
| CDX75029 | Canola | nucleus | 19.12 | 27.81 |
| CDX80887 | Canola | nucleus | 22.06 | 27.52 |
| CDX76923 | Canola | nucleus | 30.88 | 27.1 |
| CDX89136 | Canola | nucleus | 22.79 | 27.07 |
| CDX76591 | Canola | nucleus | 22.79 | 27.07 |
| CDY11269 | Canola | nucleus | 21.69 | 27.06 |
| CDY33168 | Canola | nucleus | 18.75 | 26.98 |
| CDY57869 | Canola | nucleus | 22.79 | 26.96 |
| CDY37819 | Canola | nucleus | 30.51 | 26.77 |
| CDY33967 | Canola | nucleus | 30.51 | 26.77 |
| CDY52767 | Canola | nucleus | 25.0 | 26.77 |
| CDY46427 | Canola | nucleus | 25.0 | 26.77 |
| CDY71532 | Canola | nucleus | 22.43 | 26.75 |
| CDY27308 | Canola | nucleus | 22.43 | 26.64 |
| CDX78614 | Canola | nucleus | 29.41 | 26.58 |
| CDY69618 | Canola | nucleus | 29.78 | 26.56 |
| CDY67332 | Canola | nucleus | 29.78 | 26.56 |
| HORVU5Hr1G059410.2 | Barley | nucleus | 31.99 | 26.52 |
| CDY04896 | Canola | nucleus | 22.06 | 26.43 |
| CDY70306 | Canola | nucleus | 28.31 | 26.37 |
| CDY70870 | Canola | nucleus | 29.04 | 26.25 |
| EER98832 | Sorghum | nucleus | 30.51 | 26.18 |
| CDX85054 | Canola | nucleus | 29.41 | 26.06 |
| CDX70596 | Canola | nucleus | 29.04 | 25.99 |
| CDX69546 | Canola | nucleus | 29.41 | 25.89 |
| CDY28696 | Canola | nucleus | 25.0 | 25.76 |
| CDX80037 | Canola | nucleus | 23.9 | 25.59 |
| CDX70283 | Canola | nucleus | 20.59 | 25.57 |
| CDX70284 | Canola | nucleus | 21.32 | 25.22 |
| CDY10356 | Canola | nucleus | 21.32 | 25.22 |
| CDY41547 | Canola | nucleus | 23.53 | 25.2 |
| CDY42007 | Canola | nucleus | 20.22 | 25.11 |
| CDY71047 | Canola | nucleus | 20.96 | 24.78 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078GVJ3 | UniProt:A0A078GVJ3 | EnsemblPlants:CDY28673 | ProteinID:CDY28673 |
| ProteinID:CDY28673.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00041300001 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo |
| PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF136 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEDF3C | SEG:seg | : |
Description
BnaCnng05590DBnaCnng05590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVJ3]
Coordinates
chrLK032225:+:176180..177726
Molecular Weight (calculated)
31334.4 Da
IEP (calculated)
5.763
GRAVY (calculated)
-0.890
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNSFFFDP SLSHGNMFFL NPAAVQEAKS MMTTEESSKR RPFFCSHEDL YDDDYYDDHT PEKKRRLTSQ QVHLLEKSFE TENKLEPERK TQLANKLGLQ
101: PRQVAVWFQN RRARWKTKQL ERDFNLLKSS YDQLLSNYDS ILKDNHLLRS EVTSLVEKLQ AKEDTTNKPP GQVPEANPQQ QLHPVNMNQI EPPIKTEDRL
201: SSGSTVLDED DAPQLLDSCN SYFPIIAPIH HSEGHNNRNG SVNDRSCFVD VFVPTTSPPH GHGESLGFWG WT
101: PRQVAVWFQN RRARWKTKQL ERDFNLLKSS YDQLLSNYDS ILKDNHLLRS EVTSLVEKLQ AKEDTTNKPP GQVPEANPQQ QLHPVNMNQI EPPIKTEDRL
201: SSGSTVLDED DAPQLLDSCN SYFPIIAPIH HSEGHNNRNG SVNDRSCFVD VFVPTTSPPH GHGESLGFWG WT
001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
Arabidopsis Description
HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.