Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78614 | Canola | nucleus | 95.72 | 96.68 |
| AT5G15150.1 | Thale cress | nucleus | 90.79 | 87.9 |
| CDX85054 | Canola | nucleus | 87.5 | 86.64 |
| CDX69546 | Canola | nucleus | 87.83 | 86.41 |
| CDY70306 | Canola | nucleus | 73.36 | 76.37 |
| CDY69034 | Canola | nucleus | 59.87 | 67.91 |
| CDY69290 | Canola | nucleus | 55.26 | 67.2 |
| CDY28696 | Canola | nucleus | 54.93 | 63.26 |
| KRH40114 | Soybean | nucleus | 46.71 | 52.59 |
| KRG93515 | Soybean | nucleus | 49.34 | 51.37 |
| KRH18490 | Soybean | nucleus | 49.01 | 51.2 |
| KRH01157 | Soybean | nucleus | 43.75 | 49.63 |
| PGSC0003DMT400017751 | Potato | nucleus | 34.54 | 46.67 |
| PGSC0003DMT400003586 | Potato | nucleus | 36.51 | 46.44 |
| CDY46427 | Canola | nucleus | 38.16 | 45.67 |
| CDY52767 | Canola | nucleus | 37.83 | 45.28 |
| Solyc02g067410.1.1 | Tomato | nucleus | 39.14 | 45.25 |
| CDY38759 | Canola | nucleus | 40.79 | 43.66 |
| CDY44091 | Canola | nucleus | 37.5 | 42.86 |
| CDY11659 | Canola | nucleus | 40.46 | 42.71 |
| CDY23547 | Canola | nucleus | 39.14 | 42.5 |
| Solyc02g087840.2.1 | Tomato | nucleus | 43.09 | 42.39 |
| CDY48942 | Canola | nucleus | 22.37 | 41.98 |
| CDY48391 | Canola | nucleus | 34.54 | 41.67 |
| CDY70870 | Canola | nucleus | 40.13 | 40.53 |
| CDX67451 | Canola | nucleus | 23.68 | 40.45 |
| CDY11680 | Canola | nucleus | 23.68 | 40.45 |
| CDX75029 | Canola | nucleus | 20.07 | 32.62 |
| CDY33168 | Canola | nucleus | 20.07 | 32.28 |
| CDX99719 | Canola | nucleus | 20.07 | 31.28 |
| CDY28803 | Canola | nucleus | 15.79 | 30.77 |
| CDY69536 | Canola | nucleus | 15.79 | 30.77 |
| CDY37519 | Canola | nucleus | 25.33 | 29.62 |
| CDY49056 | Canola | nucleus | 25.33 | 29.28 |
| CDY28673 | Canola | nucleus | 25.99 | 29.04 |
| CDX80887 | Canola | nucleus | 20.72 | 28.9 |
| CDY25596 | Canola | nucleus | 25.0 | 28.57 |
| CDY11269 | Canola | nucleus | 20.39 | 28.44 |
| CDY39476 | Canola | nucleus | 25.66 | 27.66 |
| CDX69357 | Canola | nucleus | 26.64 | 27.46 |
| CDY71047 | Canola | nucleus | 20.72 | 27.39 |
| CDX75697 | Canola | nucleus | 26.32 | 27.12 |
| CDX90376 | Canola | nucleus | 25.33 | 27.02 |
| CDY10356 | Canola | nucleus | 20.39 | 26.96 |
| CDX70284 | Canola | nucleus | 20.39 | 26.96 |
| CDY25597 | Canola | nucleus | 26.32 | 26.76 |
| CDX89467 | Canola | nucleus | 26.32 | 26.67 |
| CDX76923 | Canola | nucleus | 26.97 | 26.45 |
| CDY04896 | Canola | nucleus | 19.74 | 26.43 |
| CDY71532 | Canola | nucleus | 19.41 | 25.88 |
| CDY13761 | Canola | nucleus | 26.32 | 25.72 |
| CDY69618 | Canola | nucleus | 25.33 | 25.25 |
| CDX89136 | Canola | nucleus | 18.75 | 24.89 |
| CDY37819 | Canola | nucleus | 25.33 | 24.84 |
| CDY33967 | Canola | nucleus | 25.33 | 24.84 |
| CDX70283 | Canola | nucleus | 17.76 | 24.66 |
| CDY67332 | Canola | nucleus | 24.67 | 24.59 |
| CDY57869 | Canola | nucleus | 18.42 | 24.35 |
| CDY42007 | Canola | nucleus | 17.43 | 24.2 |
| CDY27308 | Canola | nucleus | 18.09 | 24.02 |
| CDX76591 | Canola | nucleus | 18.09 | 24.02 |
| CDX80037 | Canola | nucleus | 19.41 | 23.23 |
| CDY41547 | Canola | nucleus | 19.08 | 22.83 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078C0Z7 | EnsemblPlants:CDX70596 | ProteinID:CDX70596 | ProteinID:CDX70596.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00140440001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF264 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EC3678 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g06800D
Coordinates
chrLK031791:-:1157164..1159103
Molecular Weight (calculated)
35012.8 Da
IEP (calculated)
6.700
GRAVY (calculated)
-1.000
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MYMYEEEKNN IVNSQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLSS CPPHLFYGGG GNYMMNRSMS FTGVSDHHHL TQKSPTTMNM NDQDQVGDED
101: NLSDDGSHMM LGEKKKRLNL EQVRALEKSF ELGNKLEPER KMQLAKALGL QPRQIAIWFQ NRRARWKTKQ LQRDYDSLKQ LFDVLKSDND SLQAHNKKLH
201: AEVVALKKQD LKESGKIKRE SAEASWSNNE STENNNNSSE GLKDLFPSTI RSVTTSTTSA HIEHQMVQDQ GFCNMFNGID ETTSAGYWAW PDQQQQHHNH
301: HHFN
101: NLSDDGSHMM LGEKKKRLNL EQVRALEKSF ELGNKLEPER KMQLAKALGL QPRQIAIWFQ NRRARWKTKQ LQRDYDSLKQ LFDVLKSDND SLQAHNKKLH
201: AEVVALKKQD LKESGKIKRE SAEASWSNNE STENNNNSSE GLKDLFPSTI RSVTTSTTSA HIEHQMVQDQ GFCNMFNGID ETTSAGYWAW PDQQQQHHNH
301: HHFN
001: MYMYEEERNN INNNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG GNYMMNRSMS FTGVSDHHHL TQKSPTTTNN MNDQDQVGEE
101: DNLSDDGSHM MLGEKKKRLN LEQVRALEKS FELGNKLEPE RKMQLAKALG LQPRQIAIWF QNRRARWKTK QLERDYDSLK KQFDVLKSDN DSLLAHNKKL
201: HAELVALKKH DRKESAKIKR EFAEASWSNN GSTENNHNNN SSDANHVSMI KDLFPSSIRS ATATTTSTHI DHQIVQDQDQ GFCNMFNGID ETTSASYWAW
301: PDQQQQHHNH HQFN
101: DNLSDDGSHM MLGEKKKRLN LEQVRALEKS FELGNKLEPE RKMQLAKALG LQPRQIAIWF QNRRARWKTK QLERDYDSLK KQFDVLKSDN DSLLAHNKKL
201: HAELVALKKH DRKESAKIKR EFAEASWSNN GSTENNHNNN SSDANHVSMI KDLFPSSIRS ATATTTSTHI DHQIVQDQDQ GFCNMFNGID ETTSASYWAW
301: PDQQQQHHNH HQFN
Arabidopsis Description
HAT7Homeobox-leucine zipper protein HAT7 [Source:UniProtKB/Swiss-Prot;Acc:Q00466]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.